Re: [Seqan-dev] ModifiedString question
Hi,
yes, ModifiedStrings are a different type of sequences that are views to Strings but aren't Strings itself and don't consume additional memory. You need to use a temporary "Dna5String tmp = revSeq1;" which you can pass. Alternatively you could change the interface of your function to accept any sequence, not only Dna5Strings.
Cheers,
David
--
David Weese weese@inf.fu-berlin.de
Freie Universität Berlin http://www.inf.fu-berlin.de/
Institut für Informatik Phone: +49 30 838 75246
Takustraße 9 Algorithmic Bioinformatics
14195 Berlin Room 021
Am 02.04.2012 um 14:39 schrieb Bernd Jagla:
> Hi,
>
> I have the following function:
>
> bool qualityThreshold(Dna5String& seq1, CharString& qual1, Dna5String& seq2, CharString& qual2,
> int qualityThreshold, int minLen, bool& pairedEnd,
> int& countPrimeTrimmed, int& lengthConstrain ) {
>
> now, I want to use the reverse sequence as an input using :
>
> Dna5StringReverse revSeq1(seq1);
>
> I guess I misunderstand something here, but it seems that Dna5StringReverse is not returning a DNA5String but its own type... How can I convert the Reverse in a regular DNA5String?
>
> Thanks for the clarification,
>
> Bernd
>
>
>
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