Re: [Seqan-dev] help needed to build tophat with seqan >=1.4

[Alex Mestiashvili <alex@biotec.tu-dresden.de>]

Dear Manuel,

Thank you a lot! I could successfully compile the latest version of tophat with the patch.
Awesome!

Best regards,
Alex


On 07/06/2014 01:35 PM, Holtgrewe, Manuel wrote:

Hi Alex,

attached is a patch that circumvents the problems in TopHat with SeqAn 1.4.1.

I had problems building tophat from your git repository so I had to hack the Makefiles a bit.

Do not hesitate to send another email in case the problem remains.

HTH,
Manuel
________________________________________
From: Alex Mestiashvili [alex@biotec.tu-dresden.de]
Sent: Friday, July 04, 2014 11:31 AM
To: seqan-dev@lists.fu-berlin.de
Subject: [Seqan-dev] help needed to build tophat with seqan >=1.4

Dear SeqAn Developers,

We distribute SeqAn in Debian and recently packaged SeqAn version 1.4.
However after switching to the new version, tophat [0] fails to build.
Here are the build errors which we couldn't solve:

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733352#45

It would be really great if you would give us a hint.

Debianized tophat lives here:
http://anonscm.debian.org/gitweb/?p=debian-med/tophat.git

Thank you,
Alex

[0] http://ccb.jhu.edu/software/tophat/index.shtml

Please also CC to 733352@bugs.debian.org

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