Re: [Seqan-dev] post rejected

["Siragusa, Enrico" <Enrico.Siragusa@fu-berlin.de>]

Hi,

CMake runs fine. You can get a list of valid make targets with:

# make help

The target test_basic does not exist anymore - apparently it has been split in many test_basic_…

To get started, please follow the manual: http://seqan.readthedocs.org/.

Thanks,

Enrico

On Feb 4, 2015, at 5:31 PM, Kristian Unger <kristianunger@googlemail.com> wrote:

Hi there,

please finde the output of cmake below.

Best wishes

Kristian

-bash-4.2$  cmake ../.. -DCMAKE_BUILD_TYPE=Debug

-- Initializing SeqAn Build System...

--   Determined repository date is 2014-10-26 13:28:32 +0100

--   Determined repository revision is 0b136d1

-- Configuring core

-- Configuring core/apps

-- Configuring core/apps/dfi

-- Configuring core/apps/fiona

-- Boost version: 1.54.0

-- Configuring core/apps/mason

-- Configuring core/apps/micro_razers

-- Configuring core/apps/pair_align

-- Configuring core/apps/rabema

-- Configuring core/apps/razers

-- Configuring core/apps/razers2

-- Configuring core/apps/sak

-- Configuring core/apps/sam2matrix

-- Configuring core/apps/samcat

-- Configuring core/apps/seqan_tcoffee

-- Configuring core/apps/seqcons

-- Configuring core/apps/snp_store

-- Boost version: 1.54.0

-- Configuring core/apps/splazers

-- Configuring core/apps/stellar

-- Configuring core/apps/tree_recon

-- Configuring core/demos

-- Configuring core/tests

-- Configuring core/tests/align

-- Configuring core/tests/arg_parse

-- Configuring core/tests/bam_io

-- Configuring core/tests/basic

-- Configuring core/tests/consensus

-- Configuring core/tests/file

-- Configuring core/tests/find

-- Configuring core/tests/gff_io

-- Configuring core/tests/graph_algorithms

-- Configuring core/tests/graph_align

-- Configuring core/tests/graph_msa

-- Configuring core/tests/graph_types

-- Configuring core/tests/index

-- Configuring core/tests/map

-- Configuring core/tests/misc

-- Configuring core/tests/modifier

-- Configuring core/tests/parallel

-- Configuring core/tests/pipe

-- Configuring core/tests/random

-- Configuring core/tests/score

-- Configuring core/tests/seeds

-- Configuring core/tests/seq_io

-- Configuring core/tests/sequence

-- Configuring core/tests/sequence_journaled

-- Configuring core/tests/store

-- Configuring core/tests/stream

-- Configuring core/tests/find_swift

-- Configuring extras

-- Configuring extras/apps

-- Configuring extras/apps/alf

-- Configuring extras/apps/breakpoint_calculator

--   LEMON library not found: Not building breakpoint_calculator.

-- Configuring extras/apps/bs_tools

-- Boost version: 1.54.0

-- Configuring extras/apps/fx_tools

-- Configuring extras/apps/gustaf

-- Configuring extras/apps/insegt

-- Configuring extras/apps/mason2

-- Configuring sandbox/jagla/apps/ngs_roi

-- Configuring extras/apps/param_chooser

-- Configuring extras/apps/razers3

-- Configuring extras/apps/rep_sep

-- Configuring extras/apps/searchjoin

-- Configuring extras/apps/seqan_flexbar

-- Configuring extras/apps/sgip

-- Configuring extras/apps/variant_comp

-- Configuring extras/demos

-- Configuring extras/tests

-- Configuring extras/tests/align_extend

-- Configuring extras/tests/align_profile

-- Configuring extras/tests/align_split

-- Configuring extras/tests/alignment_free

-- Configuring extras/tests/bed_io

-- Configuring extras/tests/find_motif

-- Configuring extras/tests/index

-- Configuring extras/tests/multiple_translation_units

-- Configuring extras/tests/parse_lm

-- Configuring extras/tests/roi_io

-- Configuring extras/tests/statistics

-- Configuring extras/tests/translation

-- Configuring extras/tests/vcf_io

-- Configuring docs

-- Configuring manual

-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 

--   Sphinx not found, not building sphinx manual as a test.

-- Configuring sandbox

-- Configuring util/py_lib

--   adding nosetests for seqan.dox

-- Configuring done

-- Generating done

-- Build files have been written to: /home/zyto/unger/Downloads/seqan/build/Debug

On 3 February 2015 at 21:15, Siragusa, Enrico <Enrico.Siragusa@fu-berlin.de> wrote:

Hi Kristian,

I assume you are going over the following sequence of commands, as in https://github.com/seqan/seqan/blob/master/README.rst#for-the-impatient

# mkdir build/Debug

# cd build/Debug

# cmake ../.. -DCMAKE_BUILD_TYPE=Debug

# make test_basic

Could you please post the full output of cmake?

Thanks,

Enrico

Begin forwarded message:

From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>

To: "Hauswedell, Hannes" <Hannes.Hauswedell@fu-berlin.de>, Rahn, René <rene.maerker@fu-berlin.de>, "Siragusa, Enrico" <Enrico.Siragusa@fu-berlin.de>

Subject: FW: post rejected

Date: February 2, 2015 at 5:51:49 PM GMT+1

---

From: Kristian Unger [kristianunger@googlemail.com]
Sent: Monday, February 02, 2015 5:17 PM
To: seqan-dev-owner@lists.fu-berlin.de
Subject: post rejected

Hi there

I have tried to post the following message:

"I am trying to compile seqan following the instructions as given in the README.rst.

When it comes to the step 

> make test_basic

I get the error

> make: *** no role to create »test_basic« .

I used git clone https://github.com/seqan/seqan to get hold of the source files and I am trying to compile on a Fedora 64 bit system.

Can you help me sorting this out, please?

Best

Kristian"

But it was rejected although I am registered with the list. Can you assist?

Best

Kristian