Re: [Seqan-dev] GOMP_4.0' not found!

[Yifang Tan <yifangt@gmail.com>]

Thanks!

So your mason2 uses part of the libraries, but not the compiler, so that gcc-4.8 still works with the updated libraries. Is that right?

I did not see any update with the libs (*.so files under /usr/lib/x86_64-linux-gnu/).

Sorry for my naive questions as I do not have CS background. I need your manson2_simulator which coincidently uses seqan libs (I am trying to catch!), so that I want to find out how it works to help my understanding with this example.

Thanks again!

On Thu, Jan 7, 2016 at 4:05 AM, Hannes Hauswedell <hannes.hauswedell@fu-berlin.de> wrote:

Am Mittwoch, 6. Januar 2016, 17:08:25 schrieb Yifang Tan:
> Thanks!
> I did upgrade gcc-4.9.0 by:
> sudo apt-get install gcc-4.9
> It works now!

Good to hear!

> However, gcc is still the same version as gcc-4.8 as:
> $ which gcc
> /usr/bin/gcc -> gcc-4.8
> I am trying to understand why. Could you explain a little bit more why this
> happened?

You now have both gcc-4.8 and gcc-4.9 installed. The default compiler is still
the old one, but the default libraries are the new ones, because they work
with both compilers. You can use the new compiler by specifying gcc-4.9
directly on the command line.

Best regards,
--
Hannes Hauswedell

PhD student
Max Planck Institute for Molecular Genetics / Freie Universität Berlin

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