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Re: [Seqan-dev] Top down iteration bug

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<-- date -->
  • From: David Weese <weese@inf.fu-berlin.de>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Tue, 29 Sep 2009 14:22:00 +0200
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: Re: [Seqan-dev] Top down iteration bug

Hi John,

sorry, I simply was snowed under with work. I could narrow down the bug to a fasta file of sequence 12 and 58 (counting starts at 0). Something is wrong with the lcp-Value of suffix 852 of seq12 ("AAA") and 771 of seq58 ("A"). The lcp-Value is 3 instead of 1, therefore the suffix tree is also wrong. I think problem is either the suffix array or the lcp table construction. I'm investigating.

Cheers,
David

John Reid schrieb:
Could someone check if ticket 93 is as serious a bug as I think it is?

http://trac.mi.fu-berlin.de/seqan/ticket/93

It has been open for 3 months now

Thanks,
John.

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  • References:
    • [Seqan-dev] Top down iteration bug
      • From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
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