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Re: [Seqan-dev] Getting started with SeqAn

<-- thread -->
<-- date -->
  • From: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Tue, 06 Dec 2011 12:43:30 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: Re: [Seqan-dev] Getting started with SeqAn

Hi Robert, are you trying to generate Makefiles with CMake or which part of the Tutorial did you follow?

What did you enter exactly to get the result from below? The output looks strange.

Can you try to perform a new clean checkout: Could you try to enter the following on the shell?

cd some-directory-where-you-want-to-do-the-checkout
svn co http://svn.mi.fu-berlin.de/seqan/trunk/seqan seqan-trunk-NEW
cd seqan-trunk-NEW
mkdir -p build/Debug
cd build/Debug
cmake ../.. -DCMAKE_BUILD_TYPE=Debug

This should work most probably.

Otherwise, I would need the full output of the commands above.

Bests,
Manuel

On 12/06/2011 10:06 AM, Robert Bakaric wrote:
Hello,

I have a simple starter question. So I have downloaded the seqan and followed the instruction on "getting started": http://trac.seqan.de/wiki/Tutorial/GettingStarted , and that worked. but now i have tried to make some demos and i got the following message:


$ cmake2.8.6 .

CMake Error at CMakeLists.txt:4 (seqan_setup_apps):
   Unknown CMake command "seqan_setup_apps".


-- Configuring incomplete, errors occurred!


I'm probably missing something obvious but, don't see it..

My OS: Ubuntu 10.04
        g++ (Ubuntu 4.4.3-4ubuntu5) 4.4.3
        cmake version 2.8.6


Thank you,

Robert

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  • References:
    • [Seqan-dev] Getting started with SeqAn
      • From: Robert Bakaric <bakaric@evolbio.mpg.de>
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