[Seqan-dev] Sparse property map
- From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
- To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Date: Fri, 15 Jul 2011 09:18:07 +0100
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: [Seqan-dev] Sparse property map
Hi,If I want to store a property for every vertex in a suffix array I can do something like this:
String< double > property;
const double v = 1.3;
resizeVertexMap( index, property );
assignProperty( property, value( top_down_it( index ) ), v );
const double prop_value = getProperty( property, value(
top_down_it( index ) ) );
Here the properties are stored in a seqan::String. What if I only want to store properties for a very few of the vertices in a very large index? Is there some sparse storage I can use instead of String?
Thanks, John.
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