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[Seqan-dev] fastq / gzip

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<-- date -->
  • From: Peter Robinson <peter.robinson@charite.de>
  • To: "seqan-dev@lists.fu-berlin.de" <seqan-dev@lists.fu-berlin.de>
  • Date: Sat, 16 Jul 2011 17:13:04 +0200
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] fastq / gzip

Hi,
I was wondering if anyone has experience with using SeqAn to read gzipped FASTQ files? It would be nice to have this all within SeqAn, but failing that, does any one have any recommendation for a gzip decompression library, perhaps boost? Is there example code anywhere (sorry if I have missed something obvious)

thanks Peter
--
PD Dr. med. Peter N. Robinson, MSc.
Institut für Medizinische Genetik und Humangenetik
Charité - Universitätsmedizin Berlin
Augustenburger Platz 1
13353 Berlin
Germany
voice: 49-30-450566042
fax:   49-30-450569915
email: peter.robinson@charite.de
http://compbio.charite.de/
http://www.human-phenotype-ontology.org
Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651



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    • Re: [Seqan-dev] fastq / gzip
      • From: "Reinert, Knut" <Knut.Reinert@fu-berlin.de>
    • Re: [Seqan-dev] fastq / gzip
      • From: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
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