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[Seqan-dev] Time complexity of posGlobalize

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<-- date -->
  • From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Mon, 25 Jul 2011 10:49:19 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] Time complexity of posGlobalize

Suppose I have an iterator over a suffix array. What is the time complexity of calling posGlobalise() on an occurrence the iterator? I'm asking because I have the option to store indexes to occurrences as global positions or as local positions (pairs of sequence ids, position in sequences). I'm guessing the latter is more time efficient but would take more storage.

Thanks,
John.



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    • Re: [Seqan-dev] Time complexity of posGlobalize
      • From: "Weese, David" <weese@campus.fu-berlin.de>
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