[Seqan-dev] Combine bit-parallel algorithm with Ukkonens trick for globalAlignment
- From: Lingjie Weng <wengl@uci.edu>
- To: seqan-dev@lists.fu-berlin.de
- Date: Wed, 15 Jun 2011 16:32:03 -0700
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: [Seqan-dev] Combine bit-parallel algorithm with Ukkonens trick for globalAlignment
Dear Seqan team, I am interested in our Seqan C++ library, it is really helpful. I am curious whether "MyersBitVector " algorithm in globalalignment has already combined with Ukkonens algorithm. I found you have MyersUkkonen in pattern matching, I am wondering if you have such implementation which could be used for sequence alignment, mainly for computing the levenshtein edit distance. Thank you for your patience. Thanks, Lingjie PhD student University of California, Irvine |
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- From: "Weese, David" <weese@campus.fu-berlin.de>
- Re: [Seqan-dev] Combine bit-parallel algorithm with Ukkonens trick for globalAlignment
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