Could anyone help Beifang with the question below?
Now I have a new question for you.
There is one example for DNA seed extension in the seqan tutorial. If I want to do the seed extension for protein sequences using blosum 62 scoring matrix.
How to do it? Can I directly use extendSeed function? It seems that the score parameter of the extendSeed function is simple score type. Can I use blosum 62 scoring matrix for extendSeed function?