[Seqan-dev] FW: about extendSeed of Seqan

From: "Kehr, Birte" <Birte.Kehr@fu-berlin.de>
To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Date: Tue, 8 Nov 2011 00:50:47 +0100
Acceptlanguage: en-US, de-DE
Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Subject: [Seqan-dev] FW: about extendSeed of Seqan

Could anyone help Beifang with the question below?

Thanks, Birte

From: Beifang Niu [mailto:neilniu.cn@gmail.com]
Sent: Montag, 7. November 2011 15:37
To: Kehr, Birte
Subject: Re: [Seqan-dev] about extendSeed of Seqan

Hi Birte,

Now I have a new question for you.

There is one example for DNA seed extension in the seqan tutorial. If I want to do the seed extension for protein sequences using blosum 62 scoring matrix.

How to do it? Can I directly use extendSeed function? It seems that the score parameter of the extendSeed function is simple score type. Can I use blosum 62 scoring matrix for extendSeed function?

thank you,

Beifang.

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