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[Seqan-dev] ModifiedString question

<-- thread -->
<-- date -->
  • From: Bernd Jagla <bernd.jagla@pasteur.fr>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Mon, 02 Apr 2012 14:39:06 +0200
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] ModifiedString question

Hi,

I have the following function:

bool qualityThreshold(Dna5String& seq1, CharString& qual1, Dna5String& seq2, CharString& qual2,
        int qualityThreshold, int minLen, bool& pairedEnd,
        int& countPrimeTrimmed, int& lengthConstrain ) {

now, I want to use the reverse sequence as an input using :

Dna5StringReverse revSeq1(seq1);

I guess I misunderstand something here, but it seems that Dna5StringReverse is not returning a DNA5String but its own type... How can I convert the Reverse in a regular DNA5String?

Thanks for the clarification,

Bernd





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    • Re: [Seqan-dev] ModifiedString question
      • From: "Weese, David" <weese@campus.fu-berlin.de>
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