Re: [Seqan-dev] RazerS 3

["Weese, David" <weese@campus.fu-berlin.de>]

Hey Sébastien, 

you're welcome. Please let me know if you encounter any problems.

Cheers,

Dave

--
David Weese weese@inf.fu-berlin.de

Freie Universität Berlin http://www.inf.fu-berlin.de/

Institut für Informatik Phone: +49 30 838 75137

Takustraße 9 Algorithmic Bioinformatics

14195 Berlin Room 020 

Am 27.08.2012 um 16:52 schrieb Sébastien Boisvert <sebastien.boisvert.3@ulaval.ca>:

Hi David,

After a 'svn up', razers3 appeared ;-)


[sboisver12@colosse1 seqan]$ ./razers3
razers3 - Fast Read Mapping with Sensitivity Control
====================================================
   razers3 [OPTIONS] <GENOME FILE> <READS FILE>
   razers3 [OPTIONS] <GENOME FILE> <PE-READS FILE1> <PE-READS FILE2>
   Try 'razers3 --help' for more information.

VERSION
   razers3 version: 3.1 [12646]
   Last update 2012-08-27


Thank you !

On 20/08/12 02:43 PM, Weese, David wrote:

Hi Sébastien,

I now moved RazerS to seqan/extras/ and cleaned it up a bit. So if you make an "svn update", follow the "Getting Started" section on trac.seqan.de, and instead of using Debug mode use the Release mode, it should compile on your system. Also I added -fomit-frame-pointer to our default CXX-Flags in Release mode. If you want to compile razers3 in Release mode with custom extra flags simply call in your build-directory:

cmake . -DCMAKE_CXX_FLAGS:STRING="-march=native" -DCMAKE_BUILD_MODE=Release
make razers3

To check which flags are actually used, call "make razers3 VERBOSE=1".

I hope that works better than the binaries. Please let me know what happened.

Cheers,
David

--
David Weese weese@inf.fu-berlin.de
Freie Universität Berlin http://www.inf.fu-berlin.de/
Institut für Informatik Phone: +49 30 838 75137
Takustraße 9 Algorithmic Bioinformatics
14195 Berlin Room 020

Am 19.08.2012 um 20:49 schrieb Sébastien Boisvert <Sebastien.Boisvert.3@ulaval.ca>
: