[Seqan-dev] Fwd: SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th

["Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>]

Dear SeqAn Users and Developers,

Next week is our SeqAn - BioStore Workshop, which will start on Tuesday the 6th of September at 10:00a.m..

The detailed schedule you can find in the attachment or at the BioStore webpage:

 http://www.seqan-biostore.de/wp/seqan-workshops/2012-seqan-workshop/schedule/

In preparation for the workshop please go through the 'Getting Started' to install SeqAn and create a first "Hello World!" application: 

http://trac.seqan.de/wiki/Tutorial/GettingStarted

The plan is that everyone has installed SeqAn already. For those who have unforseen difficulties, we offer a 'SeqAn Install Session' at 9:00a.m. before the actual start of the workshop. 

If you have any questions or if there are any last-minute registrations, please send an email to sabrina.krakau@fu-berlin.

We are looking forward to see you next week.

The SeqAn team.

   

Sabrina Krakau
Freie Universität Berlin
Institute of Computer Science
Algorithmic Bioinformatics - Project BioStore

Takustr. 9, 14195 Berlin
Telefon: +49 (0)30 838 75228

Anfang der weitergeleiteten E-Mail:

Von: "Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>

Betreff: Fwd: SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th

Datum: 27. Juli 2012 12:06:49 MESZ

An: "Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>

Kopie: "Reinert, Knut" <Knut.Reinert@fu-berlin.de>, SeqAn Development <seqan-dev@lists.fu-berlin.de>, "seqan-interests@lists.fu-berlin.de" <seqan-interests@lists.fu-berlin.de>, AG ABI ABI <agabi@mi.fu-berlin.de>

Dear SeqAn Users and Developers,

We would like to remind you of the registration for the SeqAn - BioStore Workshop 2012 .

For those who didn't register yet, please drop a short line now to sabrina.krakau@fu-berlin.de whether you want to participate.

As announced the workshop will offer a range of new tutorials for both beginners and advanced SeqAn users and developers.

Additionally, the most popular SeqAn apps will be presented.

The detailed schedule you can find on our webpage:

http://www.seqan-biostore.de/wp/seqan-workshops/2012-seqan-workshop/schedule/

The workshop fee of 50,- € (15,- € for B.Sc./M.Sc. students) can be paid at the beginning of the workshop and includes the dinner on board of the cruise ship on the Spree. 

See you in September!

The SeqAn team

Anfang der weitergeleiteten E-Mail:

Von: Sabrina Krakau <Sabrina.Krakau@fu-berlin.de>

Betreff: SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th

Datum: 16. Juli 2012 09:34:14 MESZ

An: Sabrina Krakau <Sabrina.Krakau@fu-berlin.de>

Kopie: Knut Reinert <Knut.Reinert@fu-berlin.de>, <seqan-interests@lists.fu-berlin.de>, SeqAn Development <seqan-dev@lists.fu-berlin.de>, AG ABI ABI <agabi@mi.fu-berlin.de>

Dear Seqan Users and Developers,

Thank you for your interest and participation in our poll.
Based on your preferences we could now schedule the workshop in detail.
You can have look on our webpage for an overview and the detailed informations.

http://www.seqan-biostore.de/wp/seqan-workshops/2012-seqan-workshop/schedule/

The preliminary schedule will include beginner's and advanced tutorials about the the following topics:

    Beginners:

    • SeqAn Install Session, Basics, Sequences & Iterators, Basic Sequence I/O, Alignments & MSA, Indices, Fragment Store

    Advanced:

    • Input/Output and Writing Parsers, RNA-Seq with the FragmentStore, Sequence Compression by Journaling, Simple Bowtie

    Apart from the tutorials, the workshop will address:

    • Workflows in KNIME with SeqAn, Detailed desription of the following SeqAn apps:

      RazerS 3, Stellar, SplazerS, Masai, Mason, Rabema, SAK, SeqCons, SeqAn::T-Coffe, SnpStore, Command Line Parser

One highlight this year will be the social event:

After the second workshop day we will go together to Berlin-Kreuzberg, where we will have dinner on board of the cruise ship "Philippa".

http://www.vanloon.de/kulinarische-rundfahrten/schiffe/

There will be a moderate workshop fee of 50,- € (15,- € for undergraduates), which is to pay at the beginning of the workshop. 

Action items:

1) Please send us an email to sabrina.krakau@fu-berlin until the 23th of July to register for the workshop, so we can take the number of participants into account for our planning.

2) If you would like to give a presentation about your use of SeqAn or about a problem you need an efficient algorithm for, please let us know. We can accommodate this in our schedule.

We are looking forward to meet you in September.

The SeqAn team

   

Sabrina Krakau
Freie Universität Berlin
Institute of Computer Science
Algorithmic Bioinformatics - Project BioStore

Takustr. 9, 14195 Berlin
Telefon: +49 (0)30 838 75228

Attachment: workshopSchedule2012.pdf
Description: workshopSchedule2012.pdf