Re: [Seqan-dev] GFF question

[Bernd Jagla <bernd.jagla@pasteur.fr>]

Great that is basically what I am looking for...
I am right now trying to implement handling comments for this... It is 
possible that it isn't that straight forward, or am I missing something???

Thanks,

Bernd

On 8/30/2012 2:17 PM, Holtgrewe, Manuel wrote:
> Bernd, SeqAn does not have this functionality right now. There only is the GFF functionality in the FragmentStore at the moment.
>
> However: One of the examples for writing a parser in the tutorial is for reading GFF2. While this is not tested, not really documented and does not have any annotation types builtin, it might suit your needs.
>
> http://trac.seqan.de/wiki/Tutorial/Parsing#ASimpleGFF2Parser
> http://trac.seqan.de/browser/trunk/seqan/extras/demos/tutorial/parsing/parse_gff2.cpp
>
> We plan to add such functionality to SeqAn, though.
>
> Cheers,
> Manuel
> ________________________________________
> From: Bernd Jagla [bernd.jagla@pasteur.fr]
> Sent: Thursday, August 30, 2012 1:58 PM
> To: seqan-dev@lists.fu-berlin.de
> Subject: [Seqan-dev] GFF question
>
> Hi,
>
> I am trying to use your GFF functionality...
>
> The first thing I would like to do is to print out the same GFF file as
> I read in, not by using one function but by printing each entry line by
> line...
>
> How would I do this?
>
> Thanks,
>
> Bernd
>
>
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