[Seqan-dev] SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th

["Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>]

Dear Seqan Users and Developers,

Thank you for your interest and participation in our poll.
Based on your preferences we could now schedule the workshop in detail.
You can have look on our webpage for an overview and the detailed informations.

http://www.seqan-biostore.de/wp/seqan-workshops/2012-seqan-workshop/schedule/

The preliminary schedule will include beginner's and advanced tutorials about the the following topics:

    Beginners:

    • SeqAn Install Session, Basics, Sequences & Iterators, Basic Sequence I/O, Alignments & MSA, Indices, Fragment Store

    Advanced:

    • Input/Output and Writing Parsers, RNA-Seq with the FragmentStore, Sequence Compression by Journaling, Simple Bowtie

    Apart from the tutorials, the workshop will address:

    • Workflows in KNIME with SeqAn, Detailed desription of the following SeqAn apps:

      RazerS 3, Stellar, SplazerS, Masai, Mason, Rabema, SAK, SeqCons, SeqAn::T-Coffe, SnpStore, Command Line Parser

One highlight this year will be the social event:

After the second workshop day we will go together to Berlin-Kreuzberg, where we will have dinner on board of the cruise ship "Philippa".

http://www.vanloon.de/kulinarische-rundfahrten/schiffe/

There will be a moderate workshop fee of 50,- € (15,- € for undergraduates), which is to pay at the beginning of the workshop. 

Action items:

1) Please send us an email to sabrina.krakau@fu-berlin until the 23th of July to register for the workshop, so we can take the number of participants into account for our planning.

2) If you would like to give a presentation about your use of SeqAn or about a problem you need an efficient algorithm for, please let us know. We can accommodate this in our schedule.

We are looking forward to meet you in September.

The SeqAn team

   

Sabrina Krakau
Freie Universität Berlin
Institute of Computer Science
Algorithmic Bioinformatics - Project BioStore

Takustr. 9, 14195 Berlin
Telefon: +49 (0)30 838 75228