[Seqan-dev] SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th
- From: "Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>
- To: "Krakau, Sabrina" <Sabrina.Krakau@fu-berlin.de>
- Date: Mon, 16 Jul 2012 07:34:16 +0000
- Cc: AG ABI ABI <agabi@mi.fu-berlin.de>, SeqAn Development <seqan-dev@lists.fu-berlin.de>, "seqan-interests@lists.fu-berlin.de" <seqan-interests@lists.fu-berlin.de>
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: [Seqan-dev] SeqAn - BioStore Workshop 2012, Berlin, September the 4th - 6th
Dear Seqan Users and Developers,
Thank you for your interest and participation in our poll. Based on your preferences we could now schedule the workshop in detail. You can have look on our webpage for an overview and the detailed informations. The preliminary schedule will include beginner's and advanced tutorials about the the following topics:
Beginners:
• SeqAn Install Session, Basics, Sequences & Iterators, Basic Sequence I/O, Alignments & MSA, Indices, Fragment Store
Advanced:
• Input/Output and Writing Parsers, RNA-Seq with the FragmentStore, Sequence Compression by Journaling, Simple Bowtie
Apart from the tutorials, the workshop will address:
• Workflows in KNIME with SeqAn, Detailed desription of the following SeqAn apps:
RazerS 3, Stellar, SplazerS, Masai, Mason, Rabema, SAK, SeqCons, SeqAn::T-Coffe, SnpStore, Command Line Parser
One highlight this year will be the social event:
After the second workshop day we will go together to Berlin-Kreuzberg, where we will have dinner on board of the cruise ship "Philippa".
Action items:
1) Please send us an email to sabrina.krakau@fu-berlin until the 23th of July to register for the workshop, so we can take the number of participants into account for
our planning.
2) If you would like to give a presentation about your use of SeqAn or about a problem you need an efficient algorithm for, please let us know. We can accommodate this in our schedule.
We are looking forward to meet you in September.
The SeqAn team ![]() ![]() Sabrina Krakau Freie Universität Berlin Institute of Computer Science Algorithmic Bioinformatics - Project BioStore Takustr. 9, 14195 Berlin Telefon: +49 (0)30 838 75228 |
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