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[Seqan-dev] comparison to python

<-- thread -->
<-- date -->
  • From: Bernd Jagla <bernd.jagla@pasteur.fr>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Wed, 07 Mar 2012 15:32:35 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] comparison to python

Hi,

this is just to warn you that there WILL be more questions coming... ;)

I just got the results back from a comparison between a simple seqan fastq reader and python version of such and it turns out that seqan is almost 100% faster : 13:38 min vs. 6:55 with the same CPU load and system resources being used...

Thanks for this nice tool....

Looking forward,

Bernd




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