Hi! I'm using seqan mason to generate mate pairs reads:./build/Release/core/apps/mason/mason illumina -i -s $i -N 10000000 -n 50 -mp -hM 8 -hnN -o ./reads.fa ./fake_patient.fasta
I do not need the sam file as output, is there any way of avoiding that is generated? ( I didn't find any option...) I need high coverage, therefore the 10 million reads. This is taking a lot of time and memory (50 minutes and up to 30Gb), is there a reason for this to take so much memory? am I doing something wrong? (my fasta file is 2.9Gb).
Thank you for your help, -- Sonia Vivas