[Seqan-dev] Makefiles

["Robinson, Peter" <peter.robinson@charite.de>]

Hallo!

I have a suggestion for the tutorial page here:

http://trac.seqan.de/wiki/BuildManual/IntegrationWithYourOwnBuildSystem

These flags are recommended:

Linux/GCC flags: -lrt (required) -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros (optional). 


However, you should put somewhere that for some seqan functions you also need the -lz flag (I noticed this with the Record reader, although I am not entirely sure why this is needed to read one uncompressed FASTA file).

-thanks & greetings!
-Peter Nick.



Dr. med. Peter N. Robinson, MSc.
Professor of Medical Genomics
Institut für Medizinische Genetik und Humangenetik
Charité - Universitätsmedizin Berlin
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Germany
+4930 450566006
Mobile: 0160 93769872
peter.robinson@charite.de
http://compbio.charite.de
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Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651

To give your data to the bioinformatician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of.
~ after Sir Ronald Aylmer Fisher