[Seqan-dev] Recent Renamings

From: &quot;Holtgrewe, Manuel&quot; &lt; manuel.holtgrewe@fu-berlin.de &gt;
To: &quot; seqan-dev@lists.fu-berlin.de &quot; &lt; seqan-dev@lists.fu-berlin.de &gt;
Date: Tue, 23 Apr 2013 17:07:24 +0200
Reply-to: SeqAn Development &lt; seqan-dev@lists.fu-berlin.de &gt;
Subject: [Seqan-dev] Recent Renamings

"Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de> · Tue, 23 Apr 2013 17:07:24 +0200

Dear all,

I just wanted to let you know that in our preparations of the 1.4 release, we are doing some renaming for better consistency. Since the functionality is not present in the 1.3 release, you will not read about them in the 1.4 changelog.

BamAlignmentRecord::rId => BamAlignmentRecord::rID
BamAlignmentRecord::pos => BamAlignmentRecord::beginPos
GffRecord::seqIdx => GffRecord::rID
GffRecord::seqID => GffRecord::ref

Also see [1].

Furthermore:

RecordReader<TString, SinglePass<Mapped> > => RecordReader<TString, SinglePass<StringReader> >
RecordReader<TString, DoublePass<Mapped> > => RecordReader<TString, DoublePass<StringReader> >

We're sorry for all caused inconveniences.

Cheers,
Manuel

[1] https://trac.seqan.de/ticket/1006