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[Seqan-dev] Problem with GCC 4.6.3 and seq_io.h

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  • From: Walter Pasiego <walter.pasiego@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Tue, 5 Feb 2013 15:04:44 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] Problem with GCC 4.6.3 and seq_io.h

Dear Colleagues,

I'm starting to play around with SeqAn using the last version available at the svn repo.
I'm using Linux with gcc 4.6.3 and Eclipse.
So far I succeeded compiling and running an example with the following headers:
#include <seqan/basic.h>
#include <seqan/sequence.h>
#include <seqan/file.h>

but as soon as I try another example with:
#include <seqan/seq_io.h>

the compilers complains with:

/src/seqan-trunk/core/include/seqan/store/store_io_sam.h: In function ‘bool seqan::operator<(const seqan::CigarElement<TOperation, TCount>&, const seqan::CigarElement<TOperation, TCount>&)’:
/src/seqan-trunk/core/include/seqan/store/store_io_sam.h:120:96: error: ‘.’ cannot appear in a constant-_expression_

Using the include file <seqan.h> (the "musketeer" header file) provokes more errors to shown up.

Can anyone please help me and tell if:
1) possibly I am doing something wrong
2) the trunk version of the SeqAn library is still incompatible with gcc 4.?.?
3) there is a workaround? Is there a recommended compiler-version?

Many thanks in advance!

Walter
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  • Follow-Ups:
    • Re: [Seqan-dev] Problem with GCC 4.6.3 and seq_io.h
      • From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
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