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[Seqan-dev] razers3 "failed for left reads in thread"

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Dear all,
I've installed the latest svn version of SeqAn on Scientific Linux. I tried several compilers. Latest try were Intel 12.0 and Gnu 4.4.
Running the following command failed on all versions (though mentioned files were present): razers3 -tc 4 -o reference.sam mass_timo_ccug_45783.1.genes.fasta GS120675_03_CGATGT_L001_R1_001.fastq GS120675_03_CGATGT_L001_R2_001.fastq
However a colleague was able to run razers3 on those files on his Ubuntu machine a while ago, probably not with the latest version! 

The error looks the following on the gnu-compiled version:
ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread 1230 



ERROR: windowFindBegin() failed for right reads in thread 2
ERROR: windowFindBegin() failed for right reads in thread 3
ERROR: windowFindBegin() failed for right reads in thread 1
ERROR: windowFindBegin() failed for right reads in thread 0
ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread 0 
321ERROR: windowFindBegin() failed for right reads in thread 0

ERROR: windowFindBegin() failed for right reads in thread 1


ERROR: windowFindBegin() failed for right reads in thread 3
ERROR: windowFindBegin() failed for right reads in thread 2
ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread 0132 
ERROR: windowFindBegin() failed for right reads in thread 0

ERROR: windowFindBegin() failed for right reads in thread 1

ERROR: windowFindBegin() failed for right reads in thread 2

ERROR: windowFindBegin() failed for right reads in thread 3
ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread ERROR: windowFindBegin() failed for left reads in thread 01 
ERROR: windowFindBegin() failed for right reads in thread 1
It continues like this and terminated with a segmentation fault. The messages on the intel-compiled version look pretty much the same.
Except for the SeqAn source code I couldn't find anything about this issue on the web. To get clues from the source code, my knowledge about SeqAn is far too superficial.
I would be glad if someone could tell me what is going wrong here and how to tackle this issue. 

Thank you very much in advance!
All the best,
Nomi
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