Hi,when runnig razers3 on my paired end HiSeq fastq files I get the following errors
razers3 -i 94 -rr 95 -tc 20 -o sample.sam reads1.fastq reads2.fastq terminate called recursively terminate called recursively Aborted or terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc AbortedIt seems as memory usage is very high (>50gb). Each of the fastq files is about 7 gb. When I take the first 100000 reads, the razers3 seems to work fine. However, I don't want to split the files in small chucks and merge them together afterwards (because of disk usage and convenience - I have about 50 samples to process)
Is there another way to handle this issue?Also, it would be very convienient if gzipped fastq files could be used as input directly - and output in bam-format would be nice as well.
Best wishes, Matthias