[Seqan-dev] SeqAn installation with manually compiled boost library

[Nomi Meixner <nomi.meixner@student.uni-tuebingen.de>]

Hello everyone,

I have trouble installing SeqAn on a RHEL system, where I installed the zlib and boost libraries manually.

My folder structure looks the following:
{TARGET_DIR}/bin -> preferred build directory
{TARGET_DIR}/doc
{TARGET_DIR}/include/boost/ -> contains all the boost subfolders .hpp files etc.
{TARGET_DIR}/lib -> contains libboost* and libz*
{TARGET_DIR}/seqan-trunk -> as checked out from SVN
{TARGET_DIR}/share

Following the tutorial (trac.seqan.de/wiki/Tutorial/GettingStarted/LinuxMakefiles), from the {TARGET_DIR}/bin folder I call cmake ../seqan-trunk -DCMAKE_BUILD_TYPE=Release, which succeeds.
Then >make
Make fails at approximately 5% having trouble to find the boost math libraries while installing snp_store.

The (potentially crucial part of the) environment looks like this:
{TARGET_DIR}/bin$ env | grep CMAKE
CMAKE_MAN_DIR=/opt/.../.../cmake/2.8.6/man
CMAKE_DOC_DIR=/opt/.../.../cmake/2.8.6/doc
CMAKE_LIBRARY_PATH={TARGET_DIR}/lib
CMAKE_BIN_DIR=/opt/.../.../cmake/2.8.6/bin
CMAKE_HOME=/opt/.../.../cmake/2.8.6
DCMAKE_INCLUDE_PATH={TARGET_DIR}/include
CMAKE_VERSION=2.8.6
CMAKE_INCLUDE_PATH={TARGET_DIR}/include

{TARGET_DIR}/bin$  env | grep LIBR
CMAKE_LIBRARY_PATH={TARGET_DIR}/lib
LD_LIBRARY_PATH={TARGET_DIR}/lib

{TARGET_DIR}/bin$  env | grep INCLUDE
DCMAKE_INCLUDE_PATH={TARGET_DIR}/include
CMAKE_INCLUDE_PATH={TARGET_DIR}/include
INCLUDE={TARGET_DIR}/include

The error looks the following and produces many more lines of errors:

[  5%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
In Datei, eingefügt von {TARGET_DIR}/seqan-trunk/core/apps/snp_store/snp_store.cpp:53:
{TARGET_DIR}/seqan-trunk/core/apps/snp_store/snp_store.h:36:40: Fehler: boost/math/distributions.hpp: Datei oder Verzeichnis nicht gefunden

However the file{TARGET_DIR}> ls include/boost/math/distributions.hpp 
include/boost/math/distributions.hpp
DOES exist. It is just not found.

What am I doing wrong?
Any help would be greatly appreciated.
Thank you very much,

Nomi