[Seqan-dev] Seeds module upgrade

["Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>]

Dear all,

we have just replaced the seeds module with the contents of the seeds2 module. We have already updated all code in the SeqAn repository. The online API documentation will be updated automatically in about one hour and we will update the Seed-and-Extend documentation soon.

The new seeds module has the features of the old module but should have no memory leaks and integrate more nicely into the SeqAn library. Furthermore, the banded chain alignment algorithm should now work robustly. The latter uses Rene's updated align module.

If you have used the seeds2 module before then there are also some API changes, e.g. the renaming of the getters/setters for the Seeds class.

If there are any questions or problems then please send us an email!

Cheers,
Manuel