Re: [Seqan-dev] seqan-dev Digest, Vol 44, Issue 1

["Henderson, Stephen" <s.henderson@ucl.ac.uk>]

Hi David

Thanks. That is understood, I found the .h files where you said and it works well. 

I have other problems... but it's Friday so I think I'll struggle on and not bother you for a bit ;0

Stephen



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Date: Thu, 09 May 2013 14:29:06 +0200
From: "Weese, David" <weese@campus.fu-berlin.de>
To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Subject: Re: [Seqan-dev] countKmers
Message-ID: <14304786-2C4F-4EF5-B7AC-4E49E0B269FD@fu-berlin.de>
Content-Type: text/plain; charset="iso-8859-1"

Hi Stephen,

currently there is not much of a difference between the trunk and the 1.4 release, which we tagged from the trunk just a couple of days ago. In the release we simply merged the trunk folders core/include and extras/include into one include folder.
You'll get the countKmers  functions if you include the alignment_free module by #include <seqan/alignment_free.h>. You can find the sources in (extras/)include/seqan/alignment_free/kmer_functions.h

HTH,
David

--
David Weese                             weese@inf.fu-berlin.de
Freie Universit?t Berlin                http://www.inf.fu-berlin.de/
Institut f?r Informatik                 Phone: +49 30 838 75137
Takustra?e 9                                    Algorithmic Bioinformatics
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