Re: [Seqan-dev] Segments with gaps

[Laécio Freitas Chaves <laeciofreitas@gmail.com>]

For example, in Figure 2 of the article [1] the second and third segment matches could be 

S0: C  -  C 

S1: C G C 

S0: C  -  C 

S1: C Q C 

?

Segment-match refinement works with the segments noted above?

[1]: http://bioinformatics.oxfordjournals.org/content/24/16/i187.full

2014/1/21 Holtgrewe, Manuel <manuel.holtgrewe@fu-berlin.de>

Dear Laecio,

could you make your question more specific and elaborate a bit?

Cheers,

Manuel

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From: Laécio Freitas Chaves [laeciofreitas@gmail.com]
Sent: Tuesday, January 21, 2014 5:05 PM
To: seqan-dev@lists.fu-berlin.de
Subject: [Seqan-dev] Segments with gaps

Hi,

A question: the SeqAn aligns segments matches with gaps?

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