Thank you a lot! I could successfully compile the latest version of tophat with the patch.
On 07/06/2014 01:35 PM, Holtgrewe, Manuel wrote:
Hi Alex, attached is a patch that circumvents the problems in TopHat with SeqAn 1.4.1. I had problems building tophat from your git repository so I had to hack the Makefiles a bit. Do not hesitate to send another email in case the problem remains. HTH, Manuel ________________________________________ From: Alex Mestiashvili [firstname.lastname@example.org] Sent: Friday, July 04, 2014 11:31 AM To: email@example.com Subject: [Seqan-dev] help needed to build tophat with seqan >=1.4 Dear SeqAn Developers, We distribute SeqAn in Debian and recently packaged SeqAn version 1.4. However after switching to the new version, tophat  fails to build. Here are the build errors which we couldn't solve: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733352#45 It would be really great if you would give us a hint. Debianized tophat lives here: http://anonscm.debian.org/gitweb/?p=debian-med/tophat.git Thank you, Alex  http://ccb.jhu.edu/software/tophat/index.shtml Please also CC to firstname.lastname@example.org _______________________________________________ seqan-dev mailing list email@example.com https://lists.fu-berlin.de/listinfo/seqan-dev