From Sabrina.Krakau@fu-berlin.de Mon Jun 09 18:34:23 2014 Received: from outpost9.zedat.fu-berlin.de ([130.133.4.95]) by list1.zedat.fu-berlin.de (Exim 4.82) with esmtp (envelope-from ) id <1Wu2Wa-0048vI-LN>; Mon, 09 Jun 2014 18:34:20 +0200 Received: from relay2.zedat.fu-berlin.de ([130.133.4.80]) by outpost.zedat.fu-berlin.de (Exim 4.82) with esmtp (envelope-from ) id <1Wu2Wa-001Dw4-Js>; Mon, 09 Jun 2014 18:34:20 +0200 Received: from cas1.campus.fu-berlin.de ([130.133.170.201]) by relay2.zedat.fu-berlin.de (Exim 4.82) with esmtps (envelope-from ) id <1Wu2Wa-0025eP-AG>; Mon, 09 Jun 2014 18:34:20 +0200 Received: from EX03B.campus.fu-berlin.de ([130.133.170.135]) by CAS1.campus.fu-berlin.de ([130.133.170.201]) with mapi id 14.03.0195.001; Mon, 9 Jun 2014 18:34:17 +0200 From: "Krakau, Sabrina" To: SeqAn Development , "seqan-interests@lists.fu-berlin.de" Thread-Topic: SeqAn - BioStore Conference 2014, Berlin, June 11th - 12th Thread-Index: Ac+D+qT+BZsLBouwR0iQX0B7nRm/VA== Message-ID: Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: Content-Type: multipart/alternative; boundary="_000_CBC5629F5E78A84A853AD8A3D5AF81BF793E4F8Aex03bcampusfube_" MIME-Version: 1.0 Date: Mon, 09 Jun 2014 18:34:16 +0200 X-Original-Date: Mon, 9 Jun 2014 16:34:16 +0000 X-Originating-IP: 130.133.170.201 X-ZEDAT-Hint: XA X-purgate: clean X-purgate-type: clean X-purgate-ID: 151147::1402331660-00000B11-13C2E82A/0/0 X-Bogosity: Ham, tests=bogofilter, spamicity=0.000000, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=-50.0 required=5.0 tests=ALL_TRUSTED,HTML_MESSAGE, T_FRT_CONTACT X-Spam-Checker-Version: SpamAssassin 3.4.0 on Benin.ZEDAT.FU-Berlin.DE X-Spam-Level: Cc: "agabi@inf.fu-berlin.de" Subject: [Seqan-dev] SeqAn - BioStore Conference 2014, Berlin, June 11th - 12th X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.16 Precedence: list Reply-To: SeqAn Development List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 09 Jun 2014 16:34:23 -0000 --_000_CBC5629F5E78A84A853AD8A3D5AF81BF793E4F8Aex03bcampusfube_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Dear SeqAn Users, Developers and Colleagues, We look forward to your participation at the SeqAn - BioStore Conference 20= 14 this week. You can find the up-to-date schedule and further information on our website= : http://www.seqan-biostore.de/wp/seqan-workshops/2014-06-seqan-conference/ The conference will start on Wednesday morning at 9:15 a.m. and will end on= Thursday afternoon. As a social event we will have a barbecue on Wednesday= evening. Location Max Planck Institute for Molecular Genetics Ihnestra=DFe 63-73 14195 Berlin GERMANY The directions to the Max Planck Institute you can find on its homepage: http://www.molgen.mpg.de/150183/Kontakt We are looking forward to see you on Wednesday. The SeqAn team. -- Sabrina Krakau [Logo] Freie Universit=E4t Berlin Institute of Computer Science Algorithmic Bioinformatics - Project BioStore Takustr. 9, 14195 Berlin Telefon: +49 (0)30 838 75240 --_000_CBC5629F5E78A84A853AD8A3D5AF81BF793E4F8Aex03bcampusfube_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable
Dear SeqAn Users, Developers and Collea= gues,

We look forward to your participati= on at the SeqAn - BioStore Conference 2014 this week.
You can find the up-to-date schedule and further information on our website= :

http://www.seqan-biostore.de/wp/seqan-workshops/2014-06-seqan-co= nference/

The conference will start on Wednesday morning at 9:15 a.m. and= will end on Thursday afternoon. As a social event we = will have a barbecue on Wednesday evening.

Location
Max Planck Institute for= Molecular Genetics
Ihnestra=DFe 63-73

14195 Berlin

GERMANY

The directions to the Max = Planck Institute you can find on its homepage:
http://www.molgen.mpg.d= e/150183/Kontakt

We are looking forward to see you o= n Wednesday.
The SeqA= n team.

 
-- <= span style=3D"font-size:10pt;" dir=3D"ltr">

<= span style=3D"font-size:10pt;" dir=3D"ltr">Sabrina Krakau
 

3D"Logo"
= Freie Universit=E4t Berlin
Institute of Computer Science

Algorithmic Bioinformatics - Project BioStore
Takustr. 9, 14195 Berlin
Telefon: +49 (0)30 838 75240

--_000_CBC5629F5E78A84A853AD8A3D5AF81BF793E4F8Aex03bcampusfube_-- From anto.trande@gmail.com Sat Jun 14 19:26:59 2014 Received: from relay1.zedat.fu-berlin.de ([130.133.4.67]) by list1.zedat.fu-berlin.de (Exim 4.82) for seqan-dev@lists.fu-berlin.de with esmtp (envelope-from ) id <1Wvrj9-001WyN-FU>; Sat, 14 Jun 2014 19:26:51 +0200 Received: from mail-we0-f180.google.com ([74.125.82.180]) by relay1.zedat.fu-berlin.de (Exim 4.82) for seqan-dev@lists.fu-berlin.de with esmtps (envelope-from ) id <1Wvrj9-003XEf-DM>; Sat, 14 Jun 2014 19:26:51 +0200 Received: by mail-we0-f180.google.com with SMTP id x48so3997234wes.39 for ; Sat, 14 Jun 2014 10:26:50 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=message-id:date:from:user-agent:mime-version:to:subject:references :in-reply-to:openpgp:content-type:content-transfer-encoding; bh=UisLmQB9sMb2uC+4x35S0fssiafVuNdfEsHTfY4TCGA=; b=VMAelqrjzsP7GFSaxhauaoQGdCnGdndyzPdBE1Ok3RoyhWcuNms+zmRnLRucp0KiUA 9jEJ7gPqeHglmgVsIjp0rU+YSNNLZBd7quOimviLU8l5LN4ATXRIRiTakK96CRBGgUnz 33p0g8T0WRoM+4Cd4BuIL2Dv1QMSs9zA0VH1y4f4OBZazRK4/15tDRLCRZwpcHowQBng tZ/AbqqQjtw4/m3BrzN9+ozFknfhUZBh1iZTEIygGQepPBJbmihuDyOjvJFS4QCYh1FE G1fkerh+2xRaAmKTwBestPko+RWMvpx8wsQhPpVu52d7YwVTaLZJgDeGJAOl9LAmovf+ CxWQ== X-Received: by 10.180.83.40 with SMTP id n8mr14058432wiy.41.1402766810016; Sat, 14 Jun 2014 10:26:50 -0700 (PDT) Received: from localhost.localdomain ([46.227.4.49]) by mx.google.com with ESMTPSA id g9sm6709550eew.9.2014.06.14.10.26.47 for (version=TLSv1 cipher=ECDHE-RSA-RC4-SHA bits=128/128); Sat, 14 Jun 2014 10:26:48 -0700 (PDT) Message-ID: <539C85D2.4080807@gmail.com> Date: Sat, 14 Jun 2014 19:26:42 +0200 From: Antonio Trande User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:24.0) Gecko/20100101 Thunderbird/24.5.0 MIME-Version: 1.0 To: seqan-dev@lists.fu-berlin.de References: <5399EEF1.5030401@gmail.com> In-Reply-To: <5399EEF1.5030401@gmail.com> X-Enigmail-Version: 1.6 OpenPGP: id=D400D6C4 X-Forwarded-Message-Id: <5399EEF1.5030401@gmail.com> Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit X-Originating-IP: 74.125.82.180 X-purgate: clean X-purgate-type: clean X-purgate-ID: 151147::1402766811-00000B11-AEB1E4A8/0/0 X-Bogosity: Ham, tests=bogofilter, spamicity=0.000000, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=-0.7 required=5.0 tests=FREEMAIL_FROM, RCVD_IN_DNSWL_LOW,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,T_DKIM_INVALID X-Spam-Checker-Version: SpamAssassin 3.4.0 on Benin.ZEDAT.FU-Berlin.DE X-Spam-Level: Subject: [Seqan-dev] SeqAn compilation flags X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.16 Precedence: list Reply-To: SeqAn Development List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 14 Jun 2014 17:26:59 -0000 -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi all. Because of motives internal to packaging in Fedora, I need to respect specific compiler flags into RPM package building; in particular they are reported here [1]. g++ compiler seems to fail the compilation of SeqAn applications by using -O2 flag. Working on my PC (RAM 4GB) I obtain a "virtual memory exhausted: Cannot allocate memory". Also with '-Os' flag is not good, Copr buildsystem on Fedora Project fails compilation for 64bit architectures; see this log[2]. Only '-O0' flag allows a complete compilation of SeqAn. In you opinion, is there any specific reason about these failures? Can you suggest to me a solution? Regards. [1]http://fedoraproject.org/wiki/Packaging:RPMMacros#Build_flags_macros_and_variables [2]http://copr-be.cloud.fedoraproject.org/results/sagitter/OpenMS/fedora-rawhide-x86_64/seqan-1.4.1-1.fc20/build.log -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQIcBAEBAgAGBQJTnIXLAAoJED2vIvfUANbEeY8QALZ9TBGJR5dgQvCdzkVIUrR3 HjNMO96EO+0/rWQMizj7cg1cpRHc7i+eucyC5C/gEeS/q71f6dALi/qnEeMGWwok MIChXNVqDPCLbYcg2qcUmK951BM2BmGSPmCf2FHd7vKdgwXHtRxS9b5CK802WffY 94V3VvvHLGe3UNligbV5rsiccWvNE2buCj4D9zmK2qpFeCvfBF9dbfWVk55YGoaC ZULG1ImMb7ZyILijaxUjwDHNz/a7lfKxViS/yT4uKLfa71ZEE0Ey2ndZLfsd1BIP KYEI7cQUiLAiN4N8Swh5xHamqVblGEVDmd14IGsV5Dt1qbFmahaIwVmYo0U/smuq L303Kj2g9y4d85LBzvDAeD3/5A4Qx3UusNWKf66mer7N501KFL6xPDYNOSMuJm/y pzJcY7tq9Td6rLySgGoJe+TOChjhId8fW2KSL+LTJeR3bTPpt2QKJV5kEbBgcoHb 3jLWqrlvaOlGACruLtwoV5/pqxX66JOR8vBgfBt44Jnzh0pzwzcl3XHJc1Odw8Ih sJv+1HXWcAaVLrwwjc+9sYw4cG+hat5nAexUBkveLt6GehaQNMRZV1ty6z6so7xU IZ2AbC+NkHlvyUcDw7/1OygKrGf/Vf/rxe90PljumUMqwAyv3BC84v5nQiJ/C8KQ nArYVVqo0KZJJPOYKdUN =ez0E -----END PGP SIGNATURE-----