[Seqan-dev] Failed to build FM index with hg19

["Tran Ngoc Hieu (Dr)" <NHTran@ntu.edu.sg>]

Dear SeqAn Team,

 

I often encounter the following error when trying to build the FM index of the human genome (UCSC hg19) by using the tool “masai_indexer” or by following your online tutorial “MiniBowtie”. The process sometimes runs smoothly, but sometimes fails, thus I don’t know what’s going on. Everything is fine with smaller genomes. Could you please give some advices? Thank you very much!

 

 

Building FM index...

Asynchronous I/O operation failed (waitFor): "Success"

fildes:  9

buffer:  7f7e3a5d6000

offset:  3298d0000

nbytes:  28000

event:   1

Raddr:   0x1def098

../../core/include/seqan/file/file_page.h:740 FAILED!  (WRITING operation could not be completed: "Success")

Aborted (core dumped)

 

 

Regards,

Hieu

 

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