[Seqan-dev] GOMP_4.0' not found!

[Yifang Tan <yifangt@gmail.com>]

Hello,
When I tried to run mason_smulator, I always got error:
$ ./bin/mason_simulator:
./bin/mason_simulator: /usr/lib/x86_64-linux-gnu/libgomp.so.1: version `GOMP_4.0' not found (required by ./bin/mason_simulator)

But /usr/lib/x86_64-linux-gnu/libgomp.so.1 is there and I am not sure what I missed.

$  ls -al /usr/lib/x86_64-linux-gnu/libgomp.*
lrwxrwxrwx 1 root root    16 May 14  2015 /usr/lib/x86_64-linux-gnu/libgomp.so.1 -> libgomp.so.1.0.0
-rw-r--r-- 1 root root 59872 May 14  2015 /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0

Here is my strace output for your reference.
$ strace ./bin/mason_simulator

execve("./bin/mason_simulator", ["./bin/mason_simulator"], [/* 70 vars */]) = 0
brk(0)                                  = 0x1038000
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7ffc6d0a1000
access("/etc/ld.so.preload", R_OK)      = -1 ENOENT (No such file or directory)
open("./tls/x86_64/librt.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./tls/librt.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./x86_64/librt.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./librt.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("/etc/ld.so.cache", O_RDONLY|O_CLOEXEC) = 3
fstat(3, {st_mode=S_IFREG|0644, st_size=173635, ...}) = 0
mmap(NULL, 173635, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7ffc6d076000
close(3)                                = 0
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
open("/lib/x86_64-linux-gnu/librt.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P#\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0644, st_size=31792, ...}) = 0
mmap(NULL, 2129016, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7ffc6cc79000
mprotect(0x7ffc6cc80000, 2093056, PROT_NONE) = 0
mmap(0x7ffc6ce7f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x6000) = 0x7ffc6ce7f000
close(3)                                = 0
open("./tls/x86_64/libpthread.so.0", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./tls/libpthread.so.0", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./x86_64/libpthread.so.0", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./libpthread.so.0", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
open("/lib/x86_64-linux-gnu/libpthread.so.0", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0po\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=141574, ...}) = 0
mmap(NULL, 2217264, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7ffc6ca5b000
mprotect(0x7ffc6ca74000, 2093056, PROT_NONE) = 0
mmap(0x7ffc6cc73000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x18000) = 0x7ffc6cc73000
mmap(0x7ffc6cc75000, 13616, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7ffc6cc75000
close(3)                                = 0
open("./tls/x86_64/libm.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./tls/libm.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./x86_64/libm.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./libm.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
open("/lib/x86_64-linux-gnu/libm.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20V\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0644, st_size=1071552, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7ffc6d075000
mmap(NULL, 3166568, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7ffc6c755000
mprotect(0x7ffc6c85a000, 2093056, PROT_NONE) = 0
mmap(0x7ffc6ca59000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x104000) = 0x7ffc6ca59000
close(3)                                = 0
open("./tls/x86_64/libgomp.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./tls/libgomp.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./x86_64/libgomp.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./libgomp.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
open("/usr/lib/x86_64-linux-gnu/libgomp.so.1", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0p7\0\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0644, st_size=59872, ...}) = 0
mmap(NULL, 2155136, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7ffc6c546000
mprotect(0x7ffc6c553000, 2097152, PROT_NONE) = 0
mmap(0x7ffc6c753000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0xd000) = 0x7ffc6c753000
close(3)                                = 0
open("./tls/x86_64/libc.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./tls/libc.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./x86_64/libc.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
open("./libc.so.6", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
access("/etc/ld.so.nohwcap", F_OK)      = -1 ENOENT (No such file or directory)
open("/lib/x86_64-linux-gnu/libc.so.6", O_RDONLY|O_CLOEXEC) = 3
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\320\37\2\0\0\0\0\0"..., 832) = 832
fstat(3, {st_mode=S_IFREG|0755, st_size=1840928, ...}) = 0
mmap(NULL, 3949248, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7ffc6c181000
mprotect(0x7ffc6c33c000, 2093056, PROT_NONE) = 0
mmap(0x7ffc6c53b000, 24576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1ba000) = 0x7ffc6c53b000
mmap(0x7ffc6c541000, 17088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7ffc6c541000
close(3)                                = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7ffc6d074000
writev(2, [{"./bin/mason_simulator", 21}, {": ", 2}, {"/usr/lib/x86_64-linux-gnu/libgom"..., 38}, {": ", 2}, {"version `GOMP_4.0' not found (re"..., 64}, {"\n", 1}], 6./bin/mason_simulator: /usr/lib/x86_64-linux-gnu/libgomp.so.1: version `GOMP_4.0' not found (required by ./bin/mason_simulator)
) = 128
exit_group(1)                           = ?
+++ exited with 1 +++

And I am using Linux Mint 17 Qiana with the kernel info as:
Linux HP32 3.13.0-24-generic #47-Ubuntu SMP Fri May 2 23:30:00 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux.

I appreciate any help on this issue! Thanks a lot!

Yifang