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Re: [Seqan-dev] post rejected

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Hi,

CMake runs fine. You can get a list of valid make targets with:

# make help

The target test_basic does not exist anymore - apparently it has been split in many test_basic_…

To get started, please follow the manual: http://seqan.readthedocs.org/.

Thanks,
Enrico

On Feb 4, 2015, at 5:31 PM, Kristian Unger <kristianunger@googlemail.com> wrote:

Hi there,

please finde the output of cmake below.

Best wishes

Kristian

-bash-4.2$  cmake ../.. -DCMAKE_BUILD_TYPE=Debug
-- Initializing SeqAn Build System...
--   Determined repository date is 2014-10-26 13:28:32 +0100
--   Determined repository revision is 0b136d1
-- Configuring core
-- Configuring core/apps
-- Configuring core/apps/dfi
-- Configuring core/apps/fiona
-- Boost version: 1.54.0
-- Configuring core/apps/mason
-- Configuring core/apps/micro_razers
-- Configuring core/apps/pair_align
-- Configuring core/apps/rabema
-- Configuring core/apps/razers
-- Configuring core/apps/razers2
-- Configuring core/apps/sak
-- Configuring core/apps/sam2matrix
-- Configuring core/apps/samcat
-- Configuring core/apps/seqan_tcoffee
-- Configuring core/apps/seqcons
-- Configuring core/apps/snp_store
-- Boost version: 1.54.0
-- Configuring core/apps/splazers
-- Configuring core/apps/stellar
-- Configuring core/apps/tree_recon
-- Configuring core/demos
-- Configuring core/tests
-- Configuring core/tests/align
-- Configuring core/tests/arg_parse
-- Configuring core/tests/bam_io
-- Configuring core/tests/basic
-- Configuring core/tests/consensus
-- Configuring core/tests/file
-- Configuring core/tests/find
-- Configuring core/tests/gff_io
-- Configuring core/tests/graph_algorithms
-- Configuring core/tests/graph_align
-- Configuring core/tests/graph_msa
-- Configuring core/tests/graph_types
-- Configuring core/tests/index
-- Configuring core/tests/map
-- Configuring core/tests/misc
-- Configuring core/tests/modifier
-- Configuring core/tests/parallel
-- Configuring core/tests/pipe
-- Configuring core/tests/random
-- Configuring core/tests/score
-- Configuring core/tests/seeds
-- Configuring core/tests/seq_io
-- Configuring core/tests/sequence
-- Configuring core/tests/sequence_journaled
-- Configuring core/tests/store
-- Configuring core/tests/stream
-- Configuring core/tests/find_swift
-- Configuring extras
-- Configuring extras/apps
-- Configuring extras/apps/alf
-- Configuring extras/apps/breakpoint_calculator
--   LEMON library not found: Not building breakpoint_calculator.
-- Configuring extras/apps/bs_tools
-- Boost version: 1.54.0
-- Configuring extras/apps/fx_tools
-- Configuring extras/apps/gustaf
-- Configuring extras/apps/insegt
-- Configuring extras/apps/mason2
-- Configuring sandbox/jagla/apps/ngs_roi
-- Configuring extras/apps/param_chooser
-- Configuring extras/apps/razers3
-- Configuring extras/apps/rep_sep
-- Configuring extras/apps/searchjoin
-- Configuring extras/apps/seqan_flexbar
-- Configuring extras/apps/sgip
-- Configuring extras/apps/variant_comp
-- Configuring extras/demos
-- Configuring extras/tests
-- Configuring extras/tests/align_extend
-- Configuring extras/tests/align_profile
-- Configuring extras/tests/align_split
-- Configuring extras/tests/alignment_free
-- Configuring extras/tests/bed_io
-- Configuring extras/tests/find_motif
-- Configuring extras/tests/index
-- Configuring extras/tests/multiple_translation_units
-- Configuring extras/tests/parse_lm
-- Configuring extras/tests/roi_io
-- Configuring extras/tests/statistics
-- Configuring extras/tests/translation
-- Configuring extras/tests/vcf_io
-- Configuring docs
-- Configuring manual
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
--   Sphinx not found, not building sphinx manual as a test.
-- Configuring sandbox
-- Configuring util/py_lib
--   adding nosetests for seqan.dox
-- Configuring done
-- Generating done
-- Build files have been written to: /home/zyto/unger/Downloads/seqan/build/Debug



On 3 February 2015 at 21:15, Siragusa, Enrico <Enrico.Siragusa@fu-berlin.de> wrote:
Hi Kristian,

I assume you are going over the following sequence of commands, as in https://github.com/seqan/seqan/blob/master/README.rst#for-the-impatient

# mkdir build/Debug
# cd build/Debug
# cmake ../.. -DCMAKE_BUILD_TYPE=Debug
# make test_basic

Could you please post the full output of cmake?

Thanks,
Enrico

Begin forwarded message:

From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
To: "Hauswedell, Hannes" <Hannes.Hauswedell@fu-berlin.de>, Rahn, René <rene.maerker@fu-berlin.de>, "Siragusa, Enrico" <Enrico.Siragusa@fu-berlin.de>
Subject: FW: post rejected
Date: February 2, 2015 at 5:51:49 PM GMT+1


From: Kristian Unger [kristianunger@googlemail.com]
Sent: Monday, February 02, 2015 5:17 PM
To: seqan-dev-owner@lists.fu-berlin.de
Subject: post rejected

Hi there

I have tried to post the following message:

"I am trying to compile seqan following the instructions as given in the README.rst.

When it comes to the step 

> make test_basic

I get the error

> make: *** no role to create »test_basic« .

I used git clone https://github.com/seqan/seqan to get hold of the source files and I am trying to compile on a Fedora 64 bit system.

Can you help me sorting this out, please?

Best

Kristian"

But it was rejected although I am registered with the list. Can you assist?

Best

Kristian



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