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[Seqan-dev] Container type for storing sequences in memory

<-- thread -->
<-- date -->
  • From: Jordan Willis <jwillis0720@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Fri, 9 Jan 2015 02:00:09 -0800
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] Container type for storing sequences in memory

Hi,

I was wondering if there is a builtin container in Seqan for storing a small database of sequence ids and sequences that can be stored in memory. The sequences will be continually iterated through and local alignments will be performed. Does anyone have any recommendations for this or perhaps point me to one of the builtin apps that does this?

Thanks so much,
j


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    • Re: [Seqan-dev] Container type for storing sequences in memory
      • From: Rahn, René <rene.maerker@fu-berlin.de>
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