Re: [Seqan-dev] Infix of const String
- From: Fadhlan Rizal <fadhlan.fari@gmail.com>
- To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Date: Wed, 3 Jun 2015 11:42:06 +0700
- Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
- Subject: Re: [Seqan-dev] Infix of const String
i don't know, but when i using my program it's work perfectly, of course i using another type (not TBarcodeString).
here my example:
DnaString mySekuens = "ACGTACGTACGT";
startPosition = 0;
endPosition = startPosition + 5;
Infix<String<Dna> >::Type inf;
inf = infix(mySekuens, startPosition, endPosition);
the output ACGTA;
2015-06-03 6:46 GMT+07:00 Alexander Vowinkel <vowinkel.alexander@gmail.com>:
Hi Team,adopting from IndexIterators Tutorial, following problem came up:When I want to save an Infix of an representative in an Index Iterator:seqan::Infix<TBarcodeString>::Type referenceIfx = infix(representative(indexIt), parentRepLength(indexIt) + 1, endPos);the error pops up, that I can't use a const String for this:/opt/seqan/seqan-src/include/seqan/sequence/segment_infix.h:135:42: error: invalid conversion from ‘seqan::Pointer_<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Type {aka const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >*}’ to ‘seqan::Pointer_<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Type {aka seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >*}’ [-fpermissive]
data_host(_toPointer(host(_other))),Solutions?Best,Alexander
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