Hello,

I've trying out the new seqa= n (f1ec3e8f9e91b8c6bb7c02cdaef1fe7577f94a19)= .

One thing I noticed when using BAM I/O (with=C2= =A0seqan::BamFileIn=C2=A0and=C2=A0seqan::BamAlignmentRecord=C2=A0)is that the=C2=A0seqan::BamAlignmentRecord::seq=C2=A0type seems= to be=C2=A0seqan::String<seqan::SimpleType<= unsigned char, seqan::Iupac_>, seqan::Alloc<> >, and whe= n I static_cast the base calls, the values are 1/2/4/8 for ACGT. I wonder i= f there's a formal way to map them back to 0/1/2/3 (I just hacked up my= own mapping function now)? or am i doing anything wrong.

Thanks for the help.

Bayo

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