From michael.crusoe@gmail.com Mon Dec 02 12:46:04 2019 Received: from relay1.zedat.fu-berlin.de ([130.133.4.67]) by list1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1ibk9Q-003Yzm-6S>; Mon, 02 Dec 2019 12:46:00 +0100 Received: from mail-ua1-f46.google.com ([209.85.222.46]) by relay1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (envelope-from ) id <1ibk9P-000zU8-Vp>; Mon, 02 Dec 2019 12:46:00 +0100 Received: by mail-ua1-f46.google.com with SMTP id o42so8443253uad.10 for ; Mon, 02 Dec 2019 03:45:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:references:in-reply-to:from:date:message-id:subject:to; bh=t7g6+j9+vGkghOCeUg6VC8IS6kX/S+sWF1YPsPE/YDM=; b=fSu1a+tZGqSmxDzTmTrG1B0XdgMwj6RrGZYqyLjSm7i5akQ5WS2Ww9AYV4mZpfdItL 4UB2lQVajI04Ucu3MO2M2MGAcEcg7hvRAcpBygk4bIDvpno8xnTbEF5H6zore2MDfytY Oe0y3scIUqOwoFRt3xyY2F71v8JxYpX66aqJxOIfA57B4nzldZEUA8ixnhEartKXyNhs 2e+UjrvK1YPMOtqrtTNXhK9bWhIDsvebtsjl9fXADQ90DWeonfjtYbtEPOlgPd6vI6Wc CXGxRDAle2XxfKvBl9nIqyPM9rT6jxSFdVMxLCgCaaFPHGyjJ2BFcODDgsAAQB3jxNpR Jc/Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to; bh=t7g6+j9+vGkghOCeUg6VC8IS6kX/S+sWF1YPsPE/YDM=; b=d+xpM/SFSMvpD4BH+a1INPFjqDHiC8Jl0ekQznQfNttjGkT1yjN7jQAMXdaSJHCL14 KIKXrWnOStv2uxF/wKGcWQP8zw+MCrh5IR9UbTzdcICBZbdVsM3Ypf4L0kcfCA489Npi GzI2DzIHD6TrgZfxQ+CRewMoHkzazgFG2vLFSY2xKGqh6VeZEqjytAGgfbNrSxc9t6FF yW2KfWIw5uTKxK9uUuKgjipjWo+2VZzwxu6VF3hbfUaIPcuTl48zNOMn1m+V/EHMcHmu w8Vak3Nr3kQe9VjdnJGCksqBcuEmjsV+XPBAyoGI5C5Kqo9odGXXIMRA7KHsKYk9gwAC 21Ag== X-Gm-Message-State: APjAAAUR0qhSSIuFAZMuyd7MkrG5JweLU/dNmxa5187cdeROI0zw87QI zfVp8iYM9WFQaopW3xw00z5GKk9ULOYzTjOi96lrOyRyufk= X-Google-Smtp-Source: APXvYqxJqebq26oL/rEEC+kofsz/k/xcoxd87rCUgfRL/1HRxr7vjwMXsL2kwNOw1Xik+2aO2EIkTyieihNUQKtQufo= X-Received: by 2002:ab0:1c6:: with SMTP id 64mr17916114ual.13.1575287156746; Mon, 02 Dec 2019 03:45:56 -0800 (PST) MIME-Version: 1.0 References: <20191202113230.GB26836@an3as.eu> In-Reply-To: <20191202113230.GB26836@an3as.eu> From: Michael Crusoe Date: Mon, 2 Dec 2019 12:45:45 +0100 Message-ID: To: seqan-dev@lists.fu-berlin.de Content-Type: multipart/alternative; boundary="00000000000065af0c0598b71fe9" X-Originating-IP: 209.85.222.46 X-ZEDAT-Hint: A X-purgate: clean X-purgate-type: clean X-purgate-ID: 151147::1575287160-0008D6D1-B7A487A5/0/0 X-Bogosity: Ham, tests=bogofilter, spamicity=0.000000, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=-0.2 required=5.0 tests=DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM,HTML_MESSAGE, RCVD_IN_MSPIKE_H2,SPF_HELO_NONE,SPF_PASS X-Spam-Checker-Version: SpamAssassin 3.4.2 on Tuvalu.ZEDAT.FU-Berlin.DE X-Spam-Level: Subject: [Seqan-dev] Fwd: Bug#936888: liblemon: ftbfs with GCC-9 X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.29 Precedence: list List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 02 Dec 2019 11:46:04 -0000 --00000000000065af0c0598b71fe9 Content-Type: text/plain; charset="UTF-8" Will a future release of seqan3 be using liblemon? -- Michael R. Crusoe ---------- Forwarded message --------- From: Andreas Tille Date: Mon, Dec 2, 2019, 12:36 Subject: Bug#936888: liblemon: ftbfs with GCC-9 To: <925749@bugs.debian.org>, Debian Mentors List < debian-mentors@lists.debian.org> Cc: <936888@bugs.debian.org> Control: tags -1 help Hi, I wonder if there might be some remaining interest in liblemon. The Debian Med team who introduced it into Debian does not need it any more for any of its packages. It seems it us orphaned upstream. I'd be willing to keep the package alive if someone might provide a patch for /<>/liblemon-1.3.1+dfsg/lemon/maps.h:193:36: error: non-type template parameters of class type only available with '-std=c++2a' or '-std=gnu++2a' as reported in bug #925749 but otherwise I'll ask ftpmaster for removal. Kind regards Andreas. -- http://fam-tille.de --00000000000065af0c0598b71fe9 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Will a future release of seqan3 be using liblemon?=C2=A0<= br>
--=C2=A0
Michael R. Crus= oe


---------- Forwarded message ---------
From: Andreas Tille <andreas@an3as.eu>=
Date: Mon, Dec 2, 2019, 12:36
Subject: Bug#936888: liblemon: ftbfs w= ith GCC-9
To: <925749@bugs= .debian.org>, Debian Mentors List <debian-mentors@lists.debian.org>
Cc: <936888@bugs.debian.org>
<= /div>

Control: tags -1 help

Hi,

I wonder if there might be some remaining interest in liblemon.=C2=A0 The Debian Med team who introduced it into Debian does not need it any more
for any of its packages.=C2=A0 It seems it us orphaned upstream.=C2=A0 I= 9;d be
willing to keep the package alive if someone might provide a patch for

=C2=A0 =C2=A0/<<BUILDDIR>>/liblemon-1.3.1+dfsg/lemon/maps.h:193= :36: error: non-type template parameters of class type only available with = '-std=3Dc++2a' or '-std=3Dgnu++2a'

as reported in bug #925749 but otherwise I'll ask ftpmaster for removal= .

Kind regards

=C2=A0 =C2=A0Andreas.


--
http://fam-tille.de

--00000000000065af0c0598b71fe9-- From Rene.Rahn@fu-berlin.de Tue Dec 03 17:27:00 2019 Received: from outpost9.zedat.fu-berlin.de ([130.133.4.95]) by list1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1icB0s-001ls9-TS>; Tue, 03 Dec 2019 17:26:59 +0100 Received: from relay2.zedat.fu-berlin.de ([130.133.4.80]) by outpost.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1icB0s-003DyZ-Qm>; Tue, 03 Dec 2019 17:26:58 +0100 Received: from camex22.campus.fu-berlin.de ([130.133.170.206]) by relay2.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:AES256-GCM-SHA384:256) (envelope-from ) id <1icB0s-003Bl1-G6>; Tue, 03 Dec 2019 17:26:58 +0100 Received: from camex21.campus.fu-berlin.de (130.133.170.205) by camex22.campus.fu-berlin.de (130.133.170.206) with Microsoft SMTP Server 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Received: by mail-vk1-f193.google.com with SMTP id i4so1906356vkc.3 for ; Wed, 04 Dec 2019 00:43:39 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:from:date:message-id:subject:to:cc; bh=vO1efMX13f1WDFxPd6RDVCldAutL/mXI9lV+pkl0roQ=; b=PGoI9w7YZHD6spkQTlikbcHm57kIH8RkuN0+D5U3Ox+UfWBfaOkstbAeKNHJ1Rixx5 mvBNrNaaaedP5UloeDXIzh7ykZY9D+mLHBaGN2bLvvYWkVuGq0X45oDU/mXDUj266RsQ qcpN+S2i2CjbR/A2XP6fZPgwYBm555twBpvKu2SQmdiv6GKstKw3STh9PuREertf8dEr XH7G1z14k2z93pr0ZNB3tYWq4A+tq7cPQg8rtBtgIbTCWmlmgpf6IiNSfzlLtWqtAdqK 8QPCzXinldyyrWz3UiyYLGacb5W2CREzjYk5MvpKgQVTDIY/gijrMSUQBL5HtoKRY5ei AWgQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to:cc; bh=vO1efMX13f1WDFxPd6RDVCldAutL/mXI9lV+pkl0roQ=; b=qXTUi9Mvn6HeO6xtefDvhlzlsVwJ9FEoKjmx0xAIDsSMGtsST7aXvlA1Zyv84Ducwi 6B2jNLKWD7l9r2W15+aOpd5mCoYPWlYvtmUBsy4+DykwnLAGGuBWsQumnVfrWgnpEiZP 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spamicity=0.135041, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=-0.2 required=5.0 tests=DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM,HTML_MESSAGE, RCVD_IN_DNSWL_NONE,RCVD_IN_MSPIKE_H2,SPF_HELO_NONE,SPF_PASS X-Spam-Checker-Version: SpamAssassin 3.4.2 on Kiribati.ZEDAT.FU-Berlin.DE X-Spam-Level: Subject: [Seqan-dev] Tips for compiling LEMON with gcc-9? X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.29 Precedence: list List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 04 Dec 2019 08:43:41 -0000 --000000000000f51dde0598dcce8a Content-Type: text/plain; charset="UTF-8" Hello, The lemon 1.3.1 source package for Debian no longer builds as Debian has upgraded to GCC 9. Here is the original report: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925749 Adding '-std=c++2a' to the CXXFLAGS makes the compilation succeed, but then one of the tests fail: 26: Test command: /build/liblemon-1.3.1+dfsg/obj-x86_64-linux-gnu/test/lgf_reader_writer_test 26: Test timeout computed to be: 10000000 26: terminate called after throwing an instance of 'lemon::FormatError' 26: what(): lemon:FormatError: Item not found 26/44 Test #26: lgf_reader_writer_test ...........Child aborted***Exception: 0.17 sec I also tested the latest code from the HG repository at http://lemon.cs.elte.hu/hg/lemon/archive/ed2c21cbd6ef.tar.bz2 (corresponding to the tip of the 1.3 branch) and had the same results. While it doesn't need '-std=c++2a'in CXXFLAGS, it still has the same test failure as above. Any hints for getting LEMON to compile with gcc-9 are very appreciated! -- Michael R. Crusoe --000000000000f51dde0598dcce8a Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hello,

The lemon 1.3.1 sourc= e package for Debian no longer builds as Debian has upgraded to GCC 9.

Here is the original report:


Adding '-std=3Dc++2a' to the CXXFLAGS makes the compilatio= n succeed, but then one of the tests fail:

26: Tes= t command: /build/liblemon-1.3.1+dfsg/obj-x86_64-linux-gnu/test/lgf_reader_= writer_test
26: Test timeout computed to be: 10000000
26: terminate c= alled after throwing an instance of 'lemon::FormatError'
26: =C2= =A0 what(): =C2=A0lemon:FormatError: Item not found
26/44 Test #26: lgf_= reader_writer_test ...........Child aborted***Exception: =C2=A0 0.17 sec

I also tested the latest code from the HG reposi= tory at http://lemon.cs.elte.hu/hg/lemon/archive/ed2c21cbd6ef.tar.bz2 (c= orresponding to the tip of the 1.3 branch) and had the same results. While = it doesn't need '-std=3Dc++2a'in CXXFLAGS, it still has the sam= e test failure as above.

Any hints for getting LEM= ON to compile with gcc-9 are very appreciated!

-- =
<= span style=3D"font-size:12.8px">Michael R. Crusoe
<= /div>
--000000000000f51dde0598dcce8a--