[Seqan-dev] INSEGT wrong output format?
- From: "Seqan Fan" <seqan_fan@mail.com>
- To: seqan-dev@lists.fu-berlin.de
- Date: Thu, 28 Mar 2019 04:37:14 +0100
- Sensitivity: Normal
- Subject: [Seqan-dev] INSEGT wrong output format?
The output file format of the INSEGT seems to be wrong.
Take a look at this: https://github.com/seqan/seqan/blob/master/apps/insegt/example/readOutput.gff
The extention name of the file is gff, but it does not conform to the GFF schema.
GFF is supposed to have 9 fields for each line, but readOutput.gff has something like this:
test_mRNA_3 test_chromosome + ENSG00000146556-18;ENSG00000146556-6 ENSG00000146556
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