From seqan_fan@mail.com Thu May 09 06:43:35 2019 Received: from relay1.zedat.fu-berlin.de ([130.133.4.67]) by list1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1hOau7-002NSu-Ac>; Thu, 09 May 2019 06:43:35 +0200 Received: from mout.gmx.com ([74.208.4.201]) by relay1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (envelope-from ) id <1hOau6-0008kl-VD>; Thu, 09 May 2019 06:43:35 +0200 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mail.com; s=dbd5af2cbaf7; t=1557377011; bh=7zuXp+Kp6f0Pkq38U6lo45z2l3BZmw4+lgA+vcRcJF0=; h=X-UI-Sender-Class:From:To:Subject:Date; b=t+k8ww0t31UqbngryjiDbdTpVV+9RdUrOZ4uEpt6IXd1AYEysmM71rzVoS+i+wZb5 FcVqeKTTDl2OSJcQqpSc4mVPETbZUWV71liE7e707Ui7H9vp1FB25de9OjaPbr1nUp 69SzurNPL06+6LY8fhC/4lzA72ojN75sxXs+FLE4= X-UI-Sender-Class: 214d933f-fd2f-45c7-a636-f5d79ae31a79 Received: from [69.196.128.151] ([69.196.128.151]) by web-mail.mail.com (3c-app-mailcom-lxa12.server.lan [10.76.45.13]) (via HTTP); Thu, 9 May 2019 06:43:31 +0200 MIME-Version: 1.0 Message-ID: From: "Seqan Fan" To: seqan-dev@lists.fu-berlin.de Content-Type: text/html; charset=UTF-8 Date: Thu, 9 May 2019 06:43:31 +0200 Importance: normal Sensitivity: Normal X-Priority: 3 X-Provags-ID: V03:K1:YzqYRNGHZFlb0DWrrwEp9h0plmOH8EWXKG7bVpmwMcDLmBWXxNrDhTkl2UZ7/nB8OZYOV lcAnnh+H8rHDjkRC0eozH3ARYg8EvnBWQdIh7MpCL/brrDvk6ouN6M7oKX950HMNl0hQR+1Yp6T7 WMLMWt8KQzWxmb/lOS0S9iNDS+MuixsbygkB2/urxlQW1ae2hujjyhkRRWjuCQ8W6btJk59oRYWg ADGspDENUcIirJrLAghGSNwWehD1HaApGRBnIv0woYaT2YiNUgDEi3NOt6/DTRpT0M5Iq81NXx3c ow= X-UI-Out-Filterresults: notjunk:1;V03:K0:MPma5AfbvT0=:Tn3QnlLX03HUw/TftrZ6qd Alr/sRQnr10JUaC6DFp2BQjft399wLpw4Vpo+ewo59MB70dzdXwHqMIcIM9BkQNGPY36VciGC XurCVNHUkTfoOWx543bi10bmT1sznMluTkzEtgR88DJ5tJW5SIqv8w+sHt76HDMJXtbeCCpNa lYFhyiDxHNjjhIj8BKST2lROU5dQo5VMe9V0/xp3KeEIXie6uVFG5JMGQRZY2zo9HIa7fBobL FsUGZaYSpI7zrZRJ/vIs7AaMiyl6VhMxJMPNJdMedxFmTgoIVRRUs9mFaGowkKo2BsQ53JJ4t SgMIK8WJPhdIwHS4oZXzWiVygpKL5ynNwHZfXT7fvsDvvrQ2Aq4rvc5Mx8kMFWWy6aDW6l5XB MPVSYVZghYLHKld6TcLajWHwoM0FNn4kvBf+B1/ibx4IYNfRUNfHzvvw8HN4Xkj0m000xnMch Gx3jhRPFMPwJeqymE83xaWpYKYO7V+KwL0WHjsmqZLMEXechHx0ybNDTMcMoRA96aZXmEpEeZ i8SB0eSso//ij0d3lm/uo7bIuELEAkOteKbrD9cWBPc526O0wCo2fRep87zZCA2Zss/n4GWZ7 vtBSTrMFteulsQkmz5oMdi4joZ5GkcC1DdsJwdd+z9YorSSfZqatzJBw== X-Originating-IP: 74.208.4.201 X-purgate: clean X-purgate-type: clean X-purgate-ID: 151147::1557377015-00069AD4-70A3E1F2/0/0 X-Bogosity: Unsure, tests=bogofilter, spamicity=0.504356, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=1.7 required=5.0 tests=DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM,FU_BOGO_UNSURE,HTML_MESSAGE, MIME_HTML_ONLY,RCVD_IN_DNSWL_LOW,SPF_PASS X-Spam-Checker-Version: SpamAssassin 3.4.2 on Tokelau.ZEDAT.FU-Berlin.DE X-Spam-Level: x Subject: [Seqan-dev] Unusual behaviors of the bs_tools/bisar X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.29 Precedence: list List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 09 May 2019 04:43:35 -0000

Anybody is using the bs_tools/bisar? I observe some weird behaviors. I make a small change in order to run bisar multiple times.

The change (in the bisar.cpp) is from

int main(int argc, char const ** argv)

int bisar_main(int argc, char const ** argv)

Then, I use my own int main(int argc, char const ** argv) in another file to call bisar_main() in a loop with multiple sets of arguments only with different gmr values.

The results are identical - gmr having no impact on the results!!

Why? Can you advise me of how to fix the problem?

Thanks.

From hannes.hauswedell@fu-berlin.de Wed May 15 11:32:05 2019 Received: from relay1.zedat.fu-berlin.de ([130.133.4.67]) by list1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1hQqGb-003JZo-7o>; Wed, 15 May 2019 11:32:05 +0200 Received: from einhorn-mail.in-berlin.de ([217.197.80.20]) by relay1.zedat.fu-berlin.de (Exim 4.85) for seqan-dev@lists.fu-berlin.de with esmtps (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256) (envelope-from ) id <1hQqGb-002fdR-4p>; Wed, 15 May 2019 11:32:05 +0200 X-Envelope-From: hannes.hauswedell@fu-berlin.de Received: from authenticated.user (localhost [127.0.0.1]) by einhorn.in-berlin.de with ESMTPSA id x4F9W1ak000467 (version=TLSv1.2 cipher=ECDHE-RSA-AES256-GCM-SHA384 bits=256 verify=NOT); Wed, 15 May 2019 11:32:01 +0200 From: Hannes Hauswedell Openpgp: preference=signencrypt Autocrypt: addr=hannes@hauswedell.net; prefer-encrypt=mutual; keydata= mDMEWjvrCBYJKwYBBAHaRw8BAQdA69H3pIQlZtmfHWcHtdO/QHaSCGncSJ5WCcrEOyLNGFq0 KUhhbm5lcyBIYXVzd2VkZWxsIDxoYW5uZXNAaGF1c3dlZGVsbC5uZXQ+iJkEExYIAEECGwMF CQPCZwAFCwkIBwIGFQgJCgsCBBYCAwECHgECF4AWIQTvVvZqpoM+Ms4FP1Vvny4w7LN5dwUC WjvrdQIZAQAKCRBvny4w7LN5d/StAQClFHWUmhZehalNE7JFiRuNpwi0/v2jKA+IU7/IvjPj HQD+JC3jTzmchT+R+SMGM4aNvHSnkM3r7z2Y46syUJz6bwC0H0hhbm5lcyBIYXVzd2VkZWxs IDxoMkBmc2ZlLm9yZz6IlgQTFggAPhYhBO9W9mqmgz4yzgU/VW+fLjDss3l3BQJaO+tWAhsD BQkDwmcABQsJCAcCBhUICQoLAgQWAgMBAh4BAheAAAoJEG+fLjDss3l3qg8A/io/KtgVK0C0 RQO4dTv4Cfof7i7Jz6BgJKNCDQnmvFl6AP0VeYDCvWJksngds2ZKz89jboAzAEzAU4/Gmx2G DJpiD7QxSGFubmVzIEhhdXN3ZWRlbGwgPHBvbGl0aWtAaGFubmVzLmhhdXN3ZWRlbGwubmV0 PoiWBBMWCAA+FiEE71b2aqaDPjLOBT9Vb58uMOyzeXcFAlo764MCGwMFCQPCZwAFCwkIBwIG FQgJCgsCBBYCAwECHgECF4AACgkQb58uMOyzeXc2RwD+PG/X0gaPyWXQfhsVC0h+KcRDRNXC U862y9AgstX0bQQBAP+oSMSu1TECWEZAlsijAL2IMpYJLObC0GRGcySHHlYOuDgEWjvrCBIK KwYBBAGXVQEFAQEHQDkbc3o1Tx1VoU3R/FTBZU466MK/hCV4wR5+LIYpy/VBAwEIB4h+BBgW CAAmFiEE71b2aqaDPjLOBT9Vb58uMOyzeXcFAlo76wgCGwwFCQPCZwAACgkQb58uMOyzeXc2 agEA/JtGlNlaJKFQMlF+apLEfQTNx1G5dALvYPwNqlNyuukBAK5uFQjrfhHPFtdi/FpZBy1m AEuR+zD6q/4VYHY98TEMuDgEWjvrCBIKKwYBBAGXVQEFAQEHQDkbc3o1Tx1VoU3R/FTBZU46 6MK/hCV4wR5+LIYpy/VBAwEIB4h+BBgWCAAmFiEE71b2aqaDPjLOBT9Vb58uMOyzeXcFAlo7 6wgCGwwFCQPCZwAACgkQb58uMOyzeXc2agEA/JtGlNlaJKFQMlF+apLEfQTNx1G5dALvYPwN qlNyuukBAK5uFQjrfhHPFtdi/FpZBy1mAEuR+zD6q/4VYHY98TEM To: "'abi-office@mi.fu-berlin.de'" Cc: "seqan-dev@lists.fu-berlin.de" Message-ID: Date: Wed, 15 May 2019 11:32:01 +0200 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Language: en-GB Content-Transfer-Encoding: 8bit X-Originating-IP: 217.197.80.20 X-purgate: clean X-purgate-type: clean X-purgate-ID: 151147::1557912725-00084B9F-E2317796/0/0 X-Bogosity: Ham, tests=bogofilter, spamicity=0.000000, version=1.2.4 X-Spam-Flag: NO X-Spam-Status: No, score=-0.0 required=5.0 tests=RCVD_IN_DNSWL_LOW, SPF_NEUTRAL, T_FILL_THIS_FORM_SHORT,URIBL_BLOCKED X-Spam-Checker-Version: SpamAssassin 3.4.2 on Kiribati.ZEDAT.FU-Berlin.DE X-Spam-Level: Subject: [Seqan-dev] SeqAn3 release and get-together X-BeenThere: seqan-dev@lists.fu-berlin.de X-Mailman-Version: 2.1.29 Precedence: list List-Id: SeqAn Development List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 15 May 2019 09:32:05 -0000 Hi everyone, after years of hard work and many a hacked-through-keyboard, we are about to release SeqAn-3.0.0 at the end of this month :-) We also forgot to celebrate SeqAn's 10th Birthday last year so we have all the more reason to have a small party! Everyone who contributed to SeqAn, who spent time with us on one of the retreats, or who would just like to celebrate with us is invited. When? 06.06.2019 16:00 – 20:00 Where? Institut für Informatik, Takustraße 9, 14195 Berlin What? BBQ and drinks We will be in front of the institute if the weather is nice (between Institut für Informatik and ZIB) or in one of the atria of the Institut if there is rain. Knut will provide some beer, but everyone should bring their own food. There is a Rewe-Supermarket in <10min walking distance. Hope to see you there, Hannes for the SeqAn core team -- Hannes Hauswedell Scientific staff & PhD candidate Freie Universität Berlin / Max Planck Institute for Molecular Genetics address Institut für Informatik Takustraße 9 Room 019 14195 Berlin telephone +49 (0)30 838-75241 fax +49 (0)30 838-75218 e-mail hannes.hauswedell@fu-berlin.de