[Seqan-dev] To read chromosome-specific records from a BAM file using SeqAn3.

From: Jin Li &lt; lijin.abc@gmail.com &gt;
To: seqan-dev@lists.fu-berlin.de
Date: Sat, 23 Nov 2019 15:57:58 -0600
Subject: [Seqan-dev] To read chromosome-specific records from a BAM file using SeqAn3.

Jin Li <lijin.abc@gmail.com> · Sat, 23 Nov 2019 15:57:58 -0600

Hi all,

I want to read a BAM file for chromosome-specific records using the
BAM index information so that I don't need to go through the whole BAM
file. For example, I want to extract alignment records in chr17 only.
Can you help point out the way for this speedup reading using SeqAn3?
Thank you.

Best regards,
Jin