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[Seqan-dev] The definition of classes in SeqAn2.

<-- thread -->
<-- date -->
  • From: Jin Li <lijin.abc@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Sat, 23 Nov 2019 16:08:48 -0600
  • Subject: [Seqan-dev] The definition of classes in SeqAn2.

Hi all,

I am trying to adapt SeqAn2 in my program. I have a problem to find
out class definitions in SeqAn2. For example, in the following
tutorial,
https://seqan.readthedocs.io/en/master/Tutorial/InputOutput/SamAndBamIO.html#accessing-the-header

`TBamContext` is used to define a variable for header information, and
I want to extract the reference names (such as chr1, chr2, xxx) from
it, and save them as std::string in native C++. However, the class's
definition is not clear, and the interfaces for the conversion are not
directly available either. Can you help point out documentation about
these class type definitions in SeqAn2? Thank you.

Best regards,
Jin



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  • Follow-Ups:
    • Re: [Seqan-dev] The definition of classes in SeqAn2.
      • From: Hannes Hauswedell <hannes.hauswedell@fu-berlin.de>
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