[Seqan-dev] Mason2 exception error
- From: Christos Matzoros <christosmatzoros@gmail.com>
- To: seqan-dev@lists.fu-berlin.de
- Date: Sat, 8 May 2021 20:42:50 +0200
- Subject: [Seqan-dev] Mason2 exception error
Hello, I use mason2 to create paired-end reads as shown bellow:
./mason_simulator -ir /home/chris/Desktop/GRCh38_latest_genomic.fa --num-threads 12 -n 1000000 --illumina-read-length 150 --input-vcf /home/chris/mason_output/variation/hg_out.vcf --out /home/chris/mason_output/simulator_output/pair_end_left_reads.fq --out-right /home/chris/mason_output/simulator_output/pair_end_right_reads.fq
and I get the following error:
MASON SIMULATOR===============____INITIALIZING______________________________________________________________Opening reference and variants file ... OKInitializing fragment-to-contig distribution ... OKInitializing simulation threads ... OKOpening output file /home/chris/mason_output/simulator_output/pair_end_left_reads.fq ... OKOpening output file /home/chris/mason_output/simulator_output/pair_end_right_reads.fq .../home/osboxes/seqan/include/seqan/basic/basic_exception.h:363 FAILED! (Uncaught exception of type MasonIOException: Could not open right/single-end output file.)stack trace:0 [0x4c401d]1 [0x4c96a6]2 [0x4c96f1]3 [0x4d4c38]4 [0x467abf]5 [0x468312]6 [0x400b42]7 [0x53c62b]8 [0x405f51]Aborted (core dumped)
I really don't know where is the problem.
Any advice would be very helpful.
Thank you,
Chris
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