Re: [Seqan-dev] SAM issue?

["Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>]

Am 22.03.2011 um 09:59 schrieb Mat:

> Hi Manuel!
> 
> Thanks a lot for all the advices - now it works! Great- If i may propose:
> 
> I couldn't find any information on the functions you used in the developer-doc's so i think it would be nice to mention in the documentation that:
> - alignedReadStore's beginPos/endPos return gap space coordinates

Actually, this is documented as such for AlignedReadStoreElement.

> - document the undocumented functions contigGaps() and positionGapToSeq()

Documented positionGapToSeq() and positionSeqToGap(). contigGaps is a variable. I fixed a documentation bug with the Gaps constructor, though.

> - point out the differences if contig sequences are not available...

Did in the documentation.

> Thanks again for the excellent support!

You're welcome. Please point out any problems you find with the documentation.

> All the best!
> 
> Mat
> 
> <ATT00001..txt>

*m