[Seqan-dev] Problem with Markov Model and creating ticket on trac

[John Reid <j.reid@mail.cryst.bbk.ac.uk>]

Hi,

I tried to create a new ticket on the seqan trac and got the following 
error:

ProgrammingError: (1146, "Table 'seqan.spamfilter_log' doesn't exist")




This was the content of the ticket I was trying to raise:




I'm using the latest svn version of seqan (rev 4975) on ubuntu with gcc 
4.3.3 and I'm getting a compilation error when I try to build a Markov 
model. As far as I can see the code below should work. Could you let me 
know if I'm doing something wrong or if this is a bug?


{{{
#include <seqan/index.h>
#include <seqan/statistical_index.h>

using namespace seqan;

int main()
{
MarkovModel< Dna > mm( 0 );
StringSet< String< Dna > > X;
mm.build( X );

return 0;
}
}}}

I get the following error:

{{{
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h: 
In member function ‘void seqan::MarkovModel<
seqan::SimpleType<unsigned char, seqan::_Dna>, double, const 
seqan::Tag<seqan::Default_> >::_computeAuxiliaryMatrices()’:
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h:180: 
instantiated from ‘void seqan::MarkovModel<
seqan::SimpleType<unsigned char, seqan::_Dna>, double, const 
seqan::Tag<seqan::Default_>
>::build(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned 
char, seqan::_Dna>, seqan::Alloc<void> >, seqan::Owner<const 
seqan::Tag<seqan::Default_> > > &)’
src/sandbox/seqan_sandbox_markov_model.cpp:14: instantiated from here
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h:399: 
error: No match for ‘_matricialSum(
seqan::String<double, seqan::Alloc<void> >, seqan::String<double, 
seqan::Alloc<void> > &, const unsigned int &)’
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h:521: 
candidates are: seqan::String<
TValue, seqan::Alloc<void> > seqan::_matricialSum(seqan::String<TValue, 
TSpec> &, seqan::String<TValue, TStringSpec> &, unsigned int)
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h:402: 
error: No match for ‘_matricialProduct(
seqan::String<double, seqan::Alloc<void> >, seqan::String<double, 
seqan::Alloc<void> > &, const unsigned int &)’
/home/john/Dev/ThirdParty/C++/seqan-svn/projects/library/seqan/statistical_index/statistical_index_markov_model.h:485: 
candidates are: seqan::String<TValue, seqan::Alloc<void> > seqan
::_matricialProduct(seqan::String<TValue, TSpec> &, 
seqan::String<TValue, TStringSpec> &, unsigned int)
}}}