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[Seqan-dev] Occurrences the longest matched needle

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  • From: Alex <alex.lavoro.propio@gmail.com>
  • To: seqan-dev@lists.fu-berlin.de
  • Date: Thu, 22 Oct 2009 18:24:03 +0200
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  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: [Seqan-dev] Occurrences the longest matched needle

I want to count the number of longest matched substring in a sequence.
For example,

typedef String<char> TSequence;
typedef StringSet<TSequence> TStringSet

TSequence haystack = "foo vino tinto bar";
StringSet<TSequence> needles;
appendValue(needles, "vino");
appendValue(needles, "vino tinto");

Finder<TSequence> finder(haystack);
Pattern<TStringSet, AhoCorasick> pattern(needles);
unsigned occurrences = 0;

while (find(finder, pattern))
  occurrences ++;

In this case, occurrences is 2, since "vino" and "vino tinto" both
match the haystack. But I only want to count the occurrences of the
longest matches - "vino tinto".

I cannot remove the needle "vino" since I also want to match the
haystack "foo vino bar".



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