Re: [Seqan-dev] mason problem

From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Date: Thu, 2 Dec 2010 20:27:29 +0100
Acceptlanguage: en-US, de-DE
Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
Subject: Re: [Seqan-dev] mason problem

Can you send me the E_tenella.fasta file? The list will probably block attachements...

On Dec 2, 2010, at 3:58 PM, Mat wrote:

Hi there!

I got a problem with mason for 454 read simulation. The command was:

mason 454 -sq -mp E_tenella.fasta

(Eimeria tenella genome)

The error message:
....
    contig # 2148/4707
    contig # 2149/4707
    contig # 2150/4707
    contig # 2151/4707
    contig # 2152/4707
    contig # 2153/4707
/home/mat/seqan/seqan-trunk/projects/library/seqan/sequence_journaled/journal_entries_sorted_array.h:394 Assertion failed : it->virtualPosition >= delta was: 216739043537519363 < 18230286505148746552
Aborted

Any suggestions?

Thanks!

best,

mat

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References:
- [Seqan-dev] mason problem
  - From: Mat <matthias.dodt@mdc-berlin.de>

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