Re: [Seqan-dev] mason problem

From: &quot;Holtgrewe, Manuel&quot; &lt; manuel.holtgrewe@fu-berlin.de &gt;
To: SeqAn Development &lt; seqan-dev@lists.fu-berlin.de &gt;
Date: Mon, 6 Dec 2010 17:34:17 +0100
Acceptlanguage: en-US, de-DE
Reply-to: SeqAn Development &lt; seqan-dev@lists.fu-berlin.de &gt;
Subject: Re: [Seqan-dev] mason problem

"Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de> · Mon, 6 Dec 2010 17:34:17 +0100

r8279 should fix this problem.

The issue was deletion of characters in the haplotype behind the actual end.

HTH
*m

Am 02.12.2010 um 15:58 schrieb Mat:

> Hi there!
> 
> I got a problem with mason for 454 read simulation. The command was:
> 
> mason 454 -sq -mp E_tenella.fasta
> 
> (Eimeria tenella genome)
> 
> The error message:
> ....
>     contig # 2148/4707
>     contig # 2149/4707
>     contig # 2150/4707
>     contig # 2151/4707
>     contig # 2152/4707
>     contig # 2153/4707
> /home/mat/seqan/seqan-trunk/projects/library/seqan/sequence_journaled/journal_entries_sorted_array.h:394 Assertion failed : it->virtualPosition >= delta was: 216739043537519363 < 18230286505148746552
> Aborted
> 
> Any suggestions?
> 
> Thanks!
> 
> best,
> 
> mat
> <ATT00001..txt>