Re: [Seqan-dev] mason problem
r8279 should fix this problem.
The issue was deletion of characters in the haplotype behind the actual end.
HTH
*m
Am 02.12.2010 um 15:58 schrieb Mat:
> Hi there!
>
> I got a problem with mason for 454 read simulation. The command was:
>
> mason 454 -sq -mp E_tenella.fasta
>
> (Eimeria tenella genome)
>
> The error message:
> ....
> contig # 2148/4707
> contig # 2149/4707
> contig # 2150/4707
> contig # 2151/4707
> contig # 2152/4707
> contig # 2153/4707
> /home/mat/seqan/seqan-trunk/projects/library/seqan/sequence_journaled/journal_entries_sorted_array.h:394 Assertion failed : it->virtualPosition >= delta was: 216739043537519363 < 18230286505148746552
> Aborted
>
> Any suggestions?
>
> Thanks!
>
> best,
>
> mat
> <ATT00001..txt>