Re: [Seqan-dev] mason problem

[Mat <matthias.dodt@mdc-berlin.de>]

Excellent! Now it works-

Thanks!

Best,

mat

Am 12/6/10 5:34 PM, schrieb Holtgrewe, Manuel:

r8279 should fix this problem.

The issue was deletion of characters in the haplotype behind the actual end.

HTH
*m

Am 02.12.2010 um 15:58 schrieb Mat:

Hi there!

I got a problem with mason for 454 read simulation. The command was:

mason 454 -sq -mp E_tenella.fasta

(Eimeria tenella genome)

The error message:
....
    contig # 2148/4707
    contig # 2149/4707
    contig # 2150/4707
    contig # 2151/4707
    contig # 2152/4707
    contig # 2153/4707
/home/mat/seqan/seqan-trunk/projects/library/seqan/sequence_journaled/journal_entries_sorted_array.h:394 Assertion failed : it->virtualPosition >= delta was: 216739043537519363 < 18230286505148746552
Aborted

Any suggestions?

Thanks!

best,

mat
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