[Seqan-dev] I have a question !! :)

[김미정 <djsmrhak@pusan.ac.kr>]

 

Hi, I’m Mi jeong Kim and student from korea.

I attend to class about Topics in Bioinformatics.

We studied about convenience of alignment tool by using SeqAn at last week

and found the use of wildcard braces { }.

But we couldn’t use braces.

 

The core of this mail !!

 

We want to know the using of the braces at this situation.

for example

GCGTTGCGCGCGCTTTATCGTTGCGCTTATGC

(GC) <- repeat

 

We tried many pattern

For example

1.     needle = “(GC){2, 4}”

2.     needle = “GC{2, 4}”

3.     needle = “GC{2, 4}+”

4.     needle = “GC+{2, 4}”

5.     needle = “(GC)+{2, 4}”

………

but this program didn’t work.

 

Could you tell me how to use the braces at this situation ?

 

 

Thank you for read my awkward mail and hope you to answer me.

Have a nice day !