Re: [Seqan-dev] SeqAn Restructuring Done

[Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>]

Hi John,

yes. I'm sorry for these failures. I committed all tests before the  
restructuring although they did not run through. Afterwards, I did not  
have time to write them. I hope that I'll find time for this over the  
weekend.

Bests,
Manuel

Am 21.04.2011 um 11:32 schrieb John Reid:

> On 07/04/11 17:37, Holtgrewe, Manuel wrote:
> > Dear all,
> >
> > we have completed the restructuring and there should be no major  
> > glitches left. We moved the files, updated the source code,  
> > tutorial and documentation. Please report any problems with the  
> > update to the mailing list or in a ticket. If you have any further  
> > questions we would be more than happy to answer them!
> >
> > In order to circumvent problems, we recommend you to perform a  
> > clean checkout of SeqAn:
> >
> >   svn co http://svn.mi.fu-berlin.de/seqan/trunk/seqan seqan-trunk
> >
> > The following should work then (assuming you are using Makefiles on  
> > Linux/Os X):
> >
> >   $ mkdir build/Debug
> >   $ cd build/Debug
> >   $ cmake ../..
> >   $ make test_basic
> >   $ ./core/tests/test_basic/test_basic
> >   ... the basic test will run ...
>
> I get 8 errors in test_basic (svn rev 9403). Are these expected?
>
> ...
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:84
> FAILED!  (Write me!)
> test_basic_proxy_iterator_constructors FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:89
> FAILED!  (Write me!)
> test_basic_proxy_iterator_assign FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:94
> FAILED!  (Write me!)
> test_basic_proxy_iterator_set FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:99
> FAILED!  (Write me!)
> test_basic_proxy_iterator_move FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:104
> FAILED!  (Write me!)
> test_basic_proxy_iterator_getValue FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:109
> FAILED!  (Write me!)
> test_basic_proxy_iterator_comparators FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:114
> FAILED!  (Write me!)
> test_basic_proxy_iterator_stream_read FAILED
> /home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/ 
> test_basic_proxy.h:119
> FAILED!  (Write me!)
> test_basic_proxy_iterator_stream_write FAILED
> ...
> **************************************
>  Total Check Points : 0
>  Found Check Points : 0
>  Lost Check Points  : 0
> --------------------------------------
>  Total Tests: 215
>  Skipped:     0
>  Errors:      8
> **************************************
>
>
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--
Manuel Holtgrewe			manuel.holtgrewe@fu-berlin.de
Freie Universität Berlin		http://www.inf.fu-berlin.de/
Institut für Informatik			Phone: +49 30 838 75246
Takustraße 9				Algorithmic Bioinformatics
14195 Berlin				Room 021