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Re: [Seqan-dev] SeqAn Restructuring Done

<-- thread
<-- date
  • From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
  • To: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Date: Thu, 21 Apr 2011 15:22:37 +0100
  • Reply-to: SeqAn Development <seqan-dev@lists.fu-berlin.de>
  • Subject: Re: [Seqan-dev] SeqAn Restructuring Done

OK. Thanks, that's good to know. John.

On 21/04/11 14:57, Manuel Holtgrewe wrote:
Hi John,

yes. I'm sorry for these failures. I committed all tests before the restructuring although they did not run through. Afterwards, I did not have time to write them. I hope that I'll find time for this over the weekend.

Bests,
Manuel

Am 21.04.2011 um 11:32 schrieb John Reid:

On 07/04/11 17:37, Holtgrewe, Manuel wrote:
Dear all,

we have completed the restructuring and there should be no major glitches left. We moved the files, updated the source code, tutorial and documentation. Please report any problems with the update to the mailing list or in a ticket. If you have any further questions we would be more than happy to answer them!

In order to circumvent problems, we recommend you to perform a clean checkout of SeqAn:

  svn co http://svn.mi.fu-berlin.de/seqan/trunk/seqan seqan-trunk

The following should work then (assuming you are using Makefiles on Linux/Os X):

  $ mkdir build/Debug
  $ cd build/Debug
  $ cmake ../..
  $ make test_basic
  $ ./core/tests/test_basic/test_basic
  ... the basic test will run ...

I get 8 errors in test_basic (svn rev 9403). Are these expected?

...
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:84
FAILED!  (Write me!)
test_basic_proxy_iterator_constructors FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:89
FAILED!  (Write me!)
test_basic_proxy_iterator_assign FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:94
FAILED!  (Write me!)
test_basic_proxy_iterator_set FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:99
FAILED!  (Write me!)
test_basic_proxy_iterator_move FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:104
FAILED!  (Write me!)
test_basic_proxy_iterator_getValue FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:109
FAILED!  (Write me!)
test_basic_proxy_iterator_comparators FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:114
FAILED!  (Write me!)
test_basic_proxy_iterator_stream_read FAILED
/home/john/Dev/ThirdParty/C++/seqan-svn/core/tests/basic/test_basic_proxy.h:119
FAILED!  (Write me!)
test_basic_proxy_iterator_stream_write FAILED
...
**************************************
 Total Check Points : 0
 Found Check Points : 0
 Lost Check Points  : 0
--------------------------------------
 Total Tests: 215
 Skipped:     0
 Errors:      8
**************************************


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<-- thread
<-- date
  • References:
    • [Seqan-dev] SeqAn Restructuring Done
      • From: "Holtgrewe, Manuel" <manuel.holtgrewe@fu-berlin.de>
    • Re: [Seqan-dev] SeqAn Restructuring Done
      • From: John Reid <j.reid@mail.cryst.bbk.ac.uk>
    • Re: [Seqan-dev] SeqAn Restructuring Done
      • From: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
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